C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphomannomutase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100417 PMM1 9606 - 22:41576894-41589890 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216259 PMM1-001 41576894-41589890 protein_coding
  ENST00000414636 PMM1-006 41584020-41589847 nonsense_mediated_decay
  ENST00000463617 PMM1-005 41576903-41580689 retained_intron
  ENST00000466645 PMM1-009 41583983-41589796 processed_transcript
  ENST00000472620 PMM1-002 41576931-41589871 retained_intron
  ENST00000478337 PMM1-008 41584006-41589825 retained_intron
  ENST00000482178 PMM1-004 41576903-41585402 retained_intron
  ENST00000485648 PMM1-003 41576937-41589818 retained_intron
  ENST00000493389 PMM1-007 41586106-41589829 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216259ENST00000463617ENST00000482178ENST00000485648ENST00000493389
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216259 36.014±0.00 8.497±0.00 3.288±0.00 18.182±10.32 13.294±12.50 14.029±11.82 1.042±0.00 25.164±18.08 13.222±10.46 9.008±7.12 8.566±0.00 25.994±14.70 18.980±4.92 39.320±9.31
ENST00000463617 N/A N/A N/A N/A N/A 0.566±0.00 N/A N/A N/A N/A N/A 0.911±0.00 N/A N/A
ENST00000482178 N/A N/A N/A N/A N/A 0.625±0.00 N/A N/A N/A 0.424±0.00 N/A N/A N/A N/A
ENST00000485648 N/A 2.117±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493389 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.967±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V8 CIL_0000V8_0002 CGP 22:41525804-41577741
CIL_00023C CIL_00023C_0001 CGP 22:41560763-41589890

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004615 IDA:IEA phosphomannomutase activity
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006013 IDA mannose metabolic process
GO:0006488 TAS dolichol-linked oligosaccharide biosynthetic process
GO:0008152 IEA metabolic process
GO:0009298 IEA GDP-mannose biosynthetic process
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019307 IEA mannose biosynthetic process
GO:0043025 IEA neuronal cell body
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038398 PMM1 phosphomannomutase 1 protein_coding Danio_rerio
ENSMUSG00000022474 Pmm1 phosphomannomutase 1 protein_coding Mus_musculus

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