C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphomannomutase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216259 PMM1-001 ENSG00000100417 9606 - 22:41576894-41589890 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216259
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216259 36.014±0.00 8.497±0.00 3.288±0.00 18.182±10.32 13.294±12.50 14.029±11.82 1.042±0.00 25.164±18.08 13.222±10.46 9.008±7.12 8.566±0.00 25.994±14.70 18.980±4.92 39.320±9.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V8 CIL_0000V8_0002 CGP 22:41525804-41577741
CIL_00023C CIL_00023C_0001 CGP 22:41560763-41589890

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004615 IDA:IEA phosphomannomutase activity
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006013 IDA mannose metabolic process
GO:0006488 TAS dolichol-linked oligosaccharide biosynthetic process
GO:0008152 IEA metabolic process
GO:0009298 IEA GDP-mannose biosynthetic process
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019307 IEA mannose biosynthetic process
GO:0043025 IEA neuronal cell body
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023112 Pmm1-001 protein_coding Mus_musculus 0 1075
ENSMUST00000071462 Pmm1-002 protein_coding Mus_musculus 0 697
ENSMUST00000147645 Pmm1-003 retained_intron Mus_musculus 0 682
ENSMUST00000155781 Pmm1-004 nonsense_mediated_decay Mus_musculus 0 470
ENSMUST00000147442 Pmm1-005 retained_intron Mus_musculus 0 233

Loading