C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100505 TRIM9 9606 - 14:50975262-51096061 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298355 TRIM9-001 50975262-51096061 protein_coding
  ENST00000338969 TRIM9-002 50978778-51095329 protein_coding
  ENST00000360392 TRIM9-003 50996064-51095076 protein_coding
  ENST00000555170 TRIM9-007 50979508-50982311 retained_intron
  ENST00000555933 TRIM9-006 50982865-50986452 retained_intron
  ENST00000557456 TRIM9-005 50982683-50988376 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298355ENST00000338969ENST00000360392ENST00000555170ENST00000555933
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298355 0.107±0.00 0.048±0.00 N/A 4.886±3.32 0.109±0.05 0.400±0.35 0.026±0.00 0.116±0.09 N/A 0.078±0.00 0.051±0.00 0.033±0.01 0.116±0.02 0.274±0.20
ENST00000338969 N/A 0.027±0.00 N/A N/A 0.106±0.00 N/A N/A N/A N/A 0.051±0.00 0.060±0.00 N/A 0.075±0.00 N/A
ENST00000360392 N/A 0.053±0.00 0.122±0.00 6.188±0.03 0.381±0.00 0.425±0.36 0.039±0.01 0.151±0.00 0.191±0.08 0.076±0.00 N/A 0.069±0.04 0.086±0.00 0.225±0.12
ENST00000555170 N/A N/A N/A N/A 1.947±0.00 N/A N/A N/A N/A N/A 0.147±0.00 N/A N/A N/A
ENST00000555933 N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069N CIL_00069N_0002 CGP 14:50975262-51257546

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008021 IEA synaptic vesicle
GO:0008270 IEA zinc ion binding
GO:0016079 IEA synaptic vesicle exocytosis
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030054 IEA cell junction
GO:0030425 IDA dendrite
GO:0035544 IEA negative regulation of SNARE complex assembly
GO:0042803 IPI protein homodimerization activity
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045955 IEA negative regulation of calcium ion-dependent exocytosis
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039123 trim9 tripartite motif-containing 9 protein_coding Danio_rerio
ENSMUSG00000021071 Trim9 tripartite motif-containing 9 protein_coding Mus_musculus

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