C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021071 Trim9 10090 - 12:70244539-70347614 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000110520 Trim9-201 70244539-70347614 protein_coding
  ENSMUST00000110522 Trim9-202 70244539-70347614 protein_coding
  ENSMUST00000167755 Trim9-203 70263732-70347614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110520ENSMUST00000110522ENSMUST00000167755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110520 0.030±0.02 0.177±0.12 0.015±0.01 10.019±2.67 0.297±0.10 0.190±0.08 0.016±0.00 0.043±0.01 0.014±0.01 0.037±0.02 0.012±0.00 0.604±0.33 0.020±0.01 N/A
ENSMUST00000110522 0.006±0.00 0.134±0.06 N/A 4.707±2.25 0.097±0.00 0.252±0.06 N/A N/A N/A N/A N/A N/A N/A 0.228±0.00
ENSMUST00000167755 N/A N/A N/A N/A N/A N/A N/A 0.016±0.01 N/A 0.008±0.00 0.009±0.00 0.157±0.01 0.006±0.00 0.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CU CIL_0003CU_0002 CGP 12:70190811-70347614
CIL_00069N CIL_00069N_0003 CGP 12:70244539-70468040

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005737 ISS cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008021 IEA synaptic vesicle
GO:0008270 IEA zinc ion binding
GO:0016079 IEA synaptic vesicle exocytosis
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030054 IEA cell junction
GO:0030425 IDA dendrite
GO:0031410 IEA cytoplasmic vesicle
GO:0035544 IEA negative regulation of SNARE complex assembly
GO:0042803 IEA protein homodimerization activity
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045202 IEA synapse
GO:0045955 IEA negative regulation of calcium ion-dependent exocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039123 trim9 tripartite motif-containing 9 protein_coding Danio_rerio
ENSG00000100505 TRIM9 tripartite motif containing 9 protein_coding Homo_sapiens

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