C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00069N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000039123-ENSDARG00000019487 CGP 7955 13:37270231-37335182
GeneTranscriptPositionBiotype
ENSDARG00000019487 (tmx1)
thioredoxin-related transmembrane protein 1
ENSDART00000026313 (tmx1-201) 37324992-37335182 protein_coding
ENSDARG00000039123 (trim9)
tripartite motif-containing 9
ENSDART00000048739 (trim9-001) 37270231-37312984 protein_coding
CIL_00069N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100505-ENSG00000139921 CGP 9606 14:50975262-51257546
GeneTranscriptPositionBiotype
ENSG00000100505 (TRIM9)
tripartite motif containing 9
ENST00000298355 (TRIM9-001) 50975262-51096061 protein_coding
ENST00000338969 (TRIM9-002) 50978778-51095329 protein_coding
ENST00000360392 (TRIM9-003) 50996064-51095076 protein_coding
ENST00000555170 (TRIM9-007) 50979508-50982311 retained_intron
ENST00000555933 (TRIM9-006) 50982865-50986452 retained_intron
ENST00000557456 (TRIM9-005) 50982683-50988376 processed_transcript
ENSG00000139921 (TMX1)
thioredoxin-related transmembrane protein 1
ENST00000457354 (TMX1-001) 51240168-51257546 protein_coding
ENST00000555574 (TMX1-002) 51240162-51245851 retained_intron
ENST00000556683 (TMX1-003) 51240250-51255654 nonsense_mediated_decay
ENSG00000201376 (SNORA70)
Small nucleolar RNA SNORA70
ENST00000364506 (SNORA70.1-202) 51244090-51244224 snoRNA
ENSG00000201820 (Y_RNA)
Y RNA
ENST00000364950 (Y_RNA.1-499) 51253933-51254023 misc_RNA
ENSG00000259055 (RP11-1140I5.1)
ENST00000554475 (RP11-1140I5.1-001) 51088957-51091288 antisense
CIL_00069N_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021071-ENSMUSG00000021072 CGP 10090 12:70244539-70468040
GeneTranscriptPositionBiotype
ENSMUSG00000021071 (Trim9)
tripartite motif-containing 9
ENSMUST00000110520 (Trim9-201) 70244539-70347614 protein_coding
ENSMUST00000110522 (Trim9-202) 70244539-70347614 protein_coding
ENSMUST00000167755 (Trim9-203) 70263732-70347614 protein_coding
ENSMUSG00000021072 (Tmx1)
thioredoxin-related transmembrane protein 1
ENSMUST00000021471 (Tmx1-001) 70453095-70468040 protein_coding
ENSMUST00000160865 (Tmx1-003) 70459841-70460576 retained_intron
ENSMUST00000162277 (Tmx1-002) 70456038-70466253 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00069N_0001ENSDARG00000019487ENSDART00000026313ENSDARG00000039123ENSDART00000048739CIL_00069N_0002ENSG00000100505ENST00000298355ENST00000338969ENST00000360392ENST00000555170ENST00000555933ENST00000557456ENSG00000139921ENST00000457354ENST00000555574ENST00000556683ENSG00000201376ENST00000364506ENSG00000201820ENST00000364950ENSG00000259055ENST00000554475CIL_00069N_0003ENSMUSG00000021071ENSMUST00000110520ENSMUST00000110522ENSMUST00000167755ENSMUSG00000021072ENSMUST00000021471ENSMUST00000160865ENSMUST00000162277
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00069N_0001ENSDARG00000019487ENSDART00000026313ENSDARG00000039123ENSDART00000048739CIL_00069N_0002ENSG00000100505ENST00000298355ENST00000338969ENST00000360392ENST00000555170ENST00000555933ENSG00000139921ENST00000457354ENST00000555574ENST00000556683ENSG00000201376ENST00000364506ENSG00000201820ENST00000364950ENSG00000259055ENST00000554475CIL_00069N_0003ENSMUSG00000021071ENSMUST00000110520ENSMUST00000110522ENSMUST00000167755ENSMUSG00000021072ENSMUST00000021471ENSMUST00000162277
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019487 ENSDART00000026313 N/A N/A N/A 6.512±4.78 N/A N/A 11.085±0.43 12.166±1.91 2.629±0.00 N/A 6.026±0.00 N/A N/A N/A
ENSDARG00000039123 ENSDART00000048739 N/A N/A N/A 24.188±17.82 N/A N/A 0.796±0.40 1.168±0.67 0.090±0.00 N/A 1.906±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100505 ENST00000298355 0.107±0.00 0.048±0.00 N/A 4.886±3.32 0.109±0.05 0.400±0.35 0.026±0.00 0.116±0.09 N/A 0.078±0.00 0.051±0.00 0.033±0.01 0.116±0.02 0.274±0.20
ENST00000338969 N/A 0.027±0.00 N/A N/A 0.106±0.00 N/A N/A N/A N/A 0.051±0.00 0.060±0.00 N/A 0.075±0.00 N/A
ENST00000360392 N/A 0.053±0.00 0.122±0.00 6.188±0.03 0.381±0.00 0.425±0.36 0.039±0.01 0.151±0.00 0.191±0.08 0.076±0.00 N/A 0.069±0.04 0.086±0.00 0.225±0.12
ENST00000555170 N/A N/A N/A N/A 1.947±0.00 N/A N/A N/A N/A N/A 0.147±0.00 N/A N/A N/A
ENST00000555933 N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139921 ENST00000457354 5.013±0.00 5.685±0.00 0.411±0.00 1.778±0.25 3.521±1.01 4.685±0.18 1.044±0.31 2.097±0.09 2.134±0.08 3.722±0.60 1.259±0.88 3.827±0.74 4.713±1.00 1.950±0.08
ENST00000555574 N/A N/A 0.868±0.00 N/A N/A N/A N/A N/A N/A N/A 1.032±0.00 N/A 9.686±0.00 N/A
ENST00000556683 10.650±0.00 5.701±0.00 0.996±0.00 3.769±0.31 7.279±1.00 5.872±0.10 1.861±0.67 4.510±0.00 4.839±2.83 5.478±1.34 0.577±0.18 3.568±1.86 5.839±5.06 5.792±0.00
ENSG00000201376 ENST00000364506 0.289±0.00 0.296±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201820 ENST00000364950 0.233±0.00 N/A N/A N/A N/A 1.441±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259055 ENST00000554475 0.095±0.00 0.025±0.00 N/A 0.172±0.12 0.067±0.00 0.065±0.00 N/A N/A 0.167±0.14 0.309±0.24 N/A 0.030±0.00 N/A 0.018±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021071 ENSMUST00000110520 0.030±0.02 0.177±0.12 0.015±0.01 10.019±2.67 0.297±0.10 0.190±0.08 0.016±0.00 0.043±0.01 0.014±0.01 0.037±0.02 0.012±0.00 0.604±0.33 0.020±0.01 N/A
ENSMUST00000110522 0.006±0.00 0.134±0.06 N/A 4.707±2.25 0.097±0.00 0.252±0.06 N/A N/A N/A N/A N/A N/A N/A 0.228±0.00
ENSMUST00000167755 N/A N/A N/A N/A N/A N/A N/A 0.016±0.01 N/A 0.008±0.00 0.009±0.00 0.157±0.01 0.006±0.00 0.090±0.00
ENSMUSG00000021072 ENSMUST00000021471 5.556±1.37 8.527±0.60 12.974±1.13 14.165±6.56 5.592±1.37 7.427±0.57 11.472±0.87 8.513±1.55 17.684±11.03 8.200±0.76 4.178±0.60 11.975±5.23 20.719±8.63 8.783±2.66
ENSMUST00000160865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.094±0.00

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