C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298355 TRIM9-001 ENSG00000100505 9606 - 14:50975262-51096061 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000298355
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000298355 0.107±0.00 0.048±0.00 4.886±3.32 0.109±0.05 0.400±0.35 0.026±0.00 0.116±0.09 0.078±0.00 0.051±0.00 0.033±0.01 0.116±0.02 0.274±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069N CIL_00069N_0002 CGP 14:50975262-51257546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008021 IEA synaptic vesicle
GO:0008270 IEA zinc ion binding
GO:0016079 IEA synaptic vesicle exocytosis
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030054 IEA cell junction
GO:0030425 IDA dendrite
GO:0035544 IEA negative regulation of SNARE complex assembly
GO:0042803 IPI protein homodimerization activity
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045955 IEA negative regulation of calcium ion-dependent exocytosis
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167755 Trim9-203 protein_coding Mus_musculus 0 2272
ENSMUST00000110520 Trim9-201 protein_coding Mus_musculus 0 2272
ENSMUST00000110522 Trim9-202 protein_coding Mus_musculus 0 2272

Loading