C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: copine VI (neuronal)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100884 CPNE6 9606 + 14:24070837-24078100 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000397016 CPNE6-003 24070837-24078100 protein_coding
  ENST00000460657 CPNE6-002 24071589-24078086 retained_intron
  ENST00000537691 CPNE6-201 24070837-24078098 protein_coding
  ENST00000557829 CPNE6-006 24075558-24078087 retained_intron
  ENST00000557889 CPNE6-017 24071187-24073094 protein_coding
  ENST00000558450 CPNE6-014 24070897-24074095 protein_coding
  ENST00000558541 CPNE6-018 24071360-24075177 protein_coding
  ENST00000558795 CPNE6-005 24071562-24075511 nonsense_mediated_decay
  ENST00000558859 CPNE6-011 24071522-24074726 protein_coding
  ENST00000558995 CPNE6-004 24070949-24078086 retained_intron
  ENST00000559197 CPNE6-019 24071532-24074311 protein_coding
  ENST00000559207 CPNE6-013 24071581-24075584 protein_coding
  ENST00000559778 CPNE6-016 24071017-24073647 protein_coding
  ENST00000560092 CPNE6-008 24071525-24074301 processed_transcript
  ENST00000560356 CPNE6-015 24070848-24074125 protein_coding
  ENST00000560761 CPNE6-010 24071090-24074314 protein_coding
  ENST00000560828 CPNE6-009 24071532-24074582 protein_coding
  ENST00000560845 CPNE6-007 24075831-24076840 retained_intron
  ENST00000560884 CPNE6-012 24071550-24074311 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397016ENST00000460657ENST00000537691ENST00000557829ENST00000557889ENST00000558450ENST00000558795ENST00000558859ENST00000558995ENST00000559207ENST00000560092ENST00000560845
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397016 N/A N/A N/A 4.655±0.00 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 0.018±0.00 N/A
ENST00000460657 N/A N/A N/A N/A N/A N/A 0.010±0.00 0.451±0.00 N/A N/A N/A N/A N/A N/A
ENST00000537691 N/A N/A N/A 27.396±0.00 N/A N/A N/A 1.719±0.00 N/A N/A N/A 0.059±0.00 0.018±0.00 N/A
ENST00000557829 N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A 0.044±0.00 N/A 0.197±0.00
ENST00000557889 N/A N/A N/A N/A 0.267±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558450 N/A N/A N/A N/A N/A N/A N/A 0.628±0.00 0.442±0.00 N/A N/A N/A N/A N/A
ENST00000558795 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A
ENST00000558859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A
ENST00000558995 N/A N/A N/A N/A N/A N/A N/A 0.298±0.00 0.089±0.00 N/A N/A N/A N/A N/A
ENST00000559207 N/A 0.034±0.00 1.212±0.00 N/A N/A 0.155±0.00 N/A 1.027±0.00 N/A N/A N/A N/A N/A 0.204±0.00
ENST00000560092 N/A N/A N/A N/A 0.108±0.00 N/A N/A N/A 0.579±0.00 N/A 0.149±0.00 N/A N/A N/A
ENST00000560845 0.276±0.00 N/A N/A N/A N/A N/A 0.152±0.00 N/A 0.343±0.22 N/A N/A N/A 0.069±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031H CIL_00031H_0001 CGP 14:24052000-24078100
CIL_0003F9 CIL_0003F9_0001 CGP 14:24070837-24115014

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001786 IEA phosphatidylserine binding
GO:0005215 TAS transporter activity
GO:0005509 TAS calcium ion binding
GO:0005515 IEA protein binding
GO:0006629 TAS lipid metabolic process
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane
GO:0016192 TAS vesicle-mediated transport
GO:0030424 IEA axon
GO:0030425 IEA dendrite
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000022212 Cpne6 copine VI protein_coding Mus_musculus

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