C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: copine VI
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022212 Cpne6 10090 + 14:55510445-55517431 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074225 Cpne6-001 55510448-55517431 protein_coding
  ENSMUST00000163767 Cpne6-005 55511360-55517431 protein_coding
  ENSMUST00000165262 Cpne6-003 55510445-55517431 protein_coding
  ENSMUST00000165725 Cpne6-006 55510597-55513692 nonsense_mediated_decay
  ENSMUST00000169869 Cpne6-004 55511311-55517431 retained_intron
  ENSMUST00000170155 Cpne6-002 55510475-55517430 retained_intron
  ENSMUST00000171643 Cpne6-007 55511985-55517429 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074225ENSMUST00000163767ENSMUST00000165262ENSMUST00000165725ENSMUST00000169869ENSMUST00000170155ENSMUST00000171643
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074225 N/A N/A 0.278±0.05 0.650±0.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163767 N/A N/A 0.600±0.00 19.571±26.90 0.028±0.00 0.058±0.00 0.020±0.00 N/A 0.040±0.01 0.004±0.00 0.037±0.01 0.138±0.05 N/A 0.041±0.03
ENSMUST00000165262 N/A N/A N/A 14.217±0.00 N/A 0.106±0.05 N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A
ENSMUST00000165725 N/A 0.065±0.01 N/A N/A N/A 0.110±0.00 N/A N/A N/A N/A N/A N/A 0.022±0.00 0.018±0.00
ENSMUST00000169869 0.036±0.02 N/A 0.212±0.00 N/A 0.023±0.00 0.113±0.06 N/A 0.038±0.00 0.044±0.03 N/A 0.052±0.00 0.047±0.00 0.004±0.00 N/A
ENSMUST00000170155 0.020±0.01 0.030±0.02 0.200±0.00 3.255±3.63 0.005±0.00 0.022±0.01 0.012±0.00 0.031±0.00 0.006±0.00 0.010±0.00 0.033±0.02 0.039±0.03 N/A 0.057±0.04
ENSMUST00000171643 0.076±0.00 0.148±0.06 N/A 0.597±0.19 0.021±0.01 0.074±0.05 0.063±0.03 0.058±0.01 0.021±0.01 0.026±0.01 N/A 0.089±0.03 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031H CIL_00031H_0002 CGP 14:55491093-55517431
CIL_0003F9 CIL_0003F9_0002 CGP 14:55510445-55524981

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001786 IDA phosphatidylserine binding
GO:0008150 ND biological_process
GO:0016020 IDA membrane
GO:0030424 IDA axon
GO:0030425 IDA dendrite
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000100884 CPNE6 copine VI (neuronal) protein_coding Homo_sapiens

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