C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: copine VI (neuronal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000537691 CPNE6-201 ENSG00000100884 9606 + 14:24070837-24078098 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyOvaryPlacentaENST00000537691
Transcript ID Brain Kidney Ovary Placenta
ENST00000537691 27.396±0.00 1.719±0.00 0.059±0.00 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031H CIL_00031H_0001 CGP 14:24052000-24078100
CIL_0003F9 CIL_0003F9_0001 CGP 14:24070837-24115014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001786 IEA phosphatidylserine binding
GO:0005215 TAS transporter activity
GO:0005509 TAS calcium ion binding
GO:0005515 IEA protein binding
GO:0006629 TAS lipid metabolic process
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane
GO:0016192 TAS vesicle-mediated transport
GO:0030424 IEA axon
GO:0030425 IEA dendrite
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165262 Cpne6-003 protein_coding Mus_musculus 0 2385
ENSMUST00000074225 Cpne6-001 protein_coding Mus_musculus 0 2309
ENSMUST00000163767 Cpne6-005 protein_coding Mus_musculus 0 2289
ENSMUST00000171643 Cpne6-007 protein_coding Mus_musculus 0 2196
ENSMUST00000169869 Cpne6-004 retained_intron Mus_musculus 0 1430
ENSMUST00000170155 Cpne6-002 retained_intron Mus_musculus 0 761
ENSMUST00000165725 Cpne6-006 nonsense_mediated_decay Mus_musculus 0 549
ENSMUST00000037900 Cpne7-001 protein_coding Mus_musculus 0 457
ENSMUST00000131659 Cpne7-002 retained_intron Mus_musculus 0 337
ENSMUST00000134235 Cpne7-003 retained_intron Mus_musculus 0 337

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