C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor GTPase activating protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101199 ARFGAP1 9606 + 20:63272785-63289793 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000353546 ARFGAP1-003 63272865-63289344 protein_coding
  ENST00000370275 ARFGAP1-004 63272833-63289788 protein_coding
  ENST00000370283 ARFGAP1-001 63272785-63289793 protein_coding
  ENST00000395285 ARFGAP1-005 63285790-63289788 retained_intron
  ENST00000468975 ARFGAP1-009 63284292-63289788 processed_transcript
  ENST00000518601 ARFGAP1-016 63272864-63286398 protein_coding
  ENST00000518618 ARFGAP1-019 63285486-63288245 processed_transcript
  ENST00000518691 ARFGAP1-018 63284435-63286327 retained_intron
  ENST00000518794 ARFGAP1-002 63284115-63289345 processed_transcript
  ENST00000519273 ARFGAP1-201 63272785-63289789 protein_coding
  ENST00000519531 ARFGAP1-014 63272829-63283528 retained_intron
  ENST00000519604 ARFGAP1-202 63272785-63289789 protein_coding
  ENST00000520022 ARFGAP1-017 63284308-63285949 retained_intron
  ENST00000520485 ARFGAP1-008 63272816-63288192 nonsense_mediated_decay
  ENST00000522403 ARFGAP1-015 63273204-63285663 protein_coding
  ENST00000522959 ARFGAP1-011 63272802-63276742 retained_intron
  ENST00000523114 ARFGAP1-010 63272795-63276547 protein_coding
  ENST00000523460 ARFGAP1-012 63272813-63287844 protein_coding
  ENST00000524192 ARFGAP1-013 63272825-63278553 retained_intron
  ENST00000547204 ARFGAP1-007 63272797-63287937 protein_coding
  ENST00000549047 ARFGAP1-021 63272811-63287688 protein_coding
  ENST00000549076 ARFGAP1-023 63287656-63289130 protein_coding
  ENST00000550188 ARFGAP1-006 63273318-63277229 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000353546ENST00000370275ENST00000370283ENST00000395285ENST00000468975ENST00000518691ENST00000518794ENST00000519273ENST00000519531ENST00000519604ENST00000520485ENST00000522403ENST00000522959ENST00000524192ENST00000549076
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000353546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A N/A
ENST00000370275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.497±0.00 N/A N/A
ENST00000370283 6.194±0.00 N/A N/A 7.559±0.00 3.334±2.36 5.943±0.00 1.695±0.00 10.336±0.00 2.265±0.00 0.977±0.00 0.378±0.00 16.990±5.06 17.863±2.33 21.390±3.95
ENST00000395285 N/A 3.524±0.00 N/A N/A N/A N/A N/A 3.659±0.00 0.954±0.00 N/A N/A 12.631±3.30 N/A N/A
ENST00000468975 N/A 6.866±0.00 N/A N/A 2.795±0.00 2.112±1.62 N/A 4.079±0.00 1.865±0.00 5.745±0.00 N/A 11.838±0.00 5.301±0.82 N/A
ENST00000518691 N/A N/A N/A N/A N/A 2.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518794 2.487±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.624±2.98 N/A N/A
ENST00000519273 N/A 4.238±0.00 N/A N/A N/A 0.378±0.00 0.339±0.00 1.397±0.00 N/A N/A N/A N/A N/A N/A
ENST00000519531 N/A N/A N/A N/A N/A N/A N/A 1.457±0.00 N/A N/A 2.054±0.00 N/A N/A N/A
ENST00000519604 N/A N/A N/A 4.463±0.00 N/A 2.871±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520485 N/A N/A N/A N/A 1.691±0.00 N/A N/A N/A 1.454±0.00 N/A N/A 2.045±0.00 N/A N/A
ENST00000522403 N/A N/A N/A 3.010±0.00 N/A 0.910±0.00 0.858±0.00 N/A N/A N/A 1.517±0.44 N/A N/A N/A
ENST00000522959 N/A N/A 2.782±0.00 4.141±0.00 5.515±0.00 2.956±0.00 N/A 5.760±0.00 6.698±0.00 N/A N/A 9.977±0.00 14.476±0.00 58.480±0.00
ENST00000524192 N/A N/A N/A N/A 2.671±0.00 N/A N/A N/A N/A 1.647±0.00 N/A N/A N/A N/A
ENST00000549076 8.476±0.00 11.161±0.00 N/A 13.513±0.00 11.298±0.00 13.963±0.00 N/A N/A 5.319±0.00 N/A 2.691±0.00 26.608±0.00 N/A 22.074±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045A CIL_00045A_0001 CGP 20:63240784-63289793
CIL_00045B CIL_00045B_0001 CGP 20:63272785-63334851

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005096 IDA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0030660 TAS Golgi-associated vesicle membrane
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0044267 TAS cellular protein metabolic process
GO:0045202 IEA synapse
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067809 ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 protein_coding Danio_rerio
ENSMUSG00000027575 Arfgap1 ADP-ribosylation factor GTPase activating protein 1 protein_coding Mus_musculus

Loading