C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor GTPase activating protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027575 Arfgap1 10090 + 2:180967225-180982526 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029092 Arfgap1-001 180967234-180982526 protein_coding
  ENSMUST00000108859 Arfgap1-008 180967300-180982311 protein_coding
  ENSMUST00000108860 Arfgap1-005 180967277-180982460 protein_coding
  ENSMUST00000108861 Arfgap1-006 180967245-180981700 protein_coding
  ENSMUST00000108862 Arfgap1-002 180967225-180982458 protein_coding
  ENSMUST00000132627 Arfgap1-011 180967279-180972929 retained_intron
  ENSMUST00000134519 Arfgap1-012 180973831-180977524 retained_intron
  ENSMUST00000136590 Arfgap1-004 180967267-180982446 processed_transcript
  ENSMUST00000138706 Arfgap1-013 180973486-180976752 retained_intron
  ENSMUST00000145629 Arfgap1-003 180967265-180982460 retained_intron
  ENSMUST00000148908 Arfgap1-015 180980349-180981397 processed_transcript
  ENSMUST00000150507 Arfgap1-014 180973503-180978042 retained_intron
  ENSMUST00000184394 Arfgap1-010 180971055-180981370 protein_coding
  ENSMUST00000185115 Arfgap1-009 180971040-180981473 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029092ENSMUST00000108859ENSMUST00000108860ENSMUST00000108861ENSMUST00000108862ENSMUST00000132627ENSMUST00000136590ENSMUST00000145629ENSMUST00000184394ENSMUST00000185115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029092 10.395±3.31 10.104±3.29 16.195±3.60 13.557±0.00 9.927±1.35 14.496±2.04 4.482±0.65 7.101±0.76 8.863±2.31 8.121±1.84 5.460±1.11 14.669±4.34 20.460±4.42 7.912±3.46
ENSMUST00000108859 N/A N/A N/A N/A N/A N/A N/A 2.696±0.00 N/A 3.103±0.33 N/A N/A N/A 2.063±0.00
ENSMUST00000108860 5.967±1.36 N/A N/A 16.946±2.88 6.019±0.00 N/A 3.640±0.42 4.820±0.74 N/A 4.433±0.00 N/A N/A N/A N/A
ENSMUST00000108861 N/A 8.337±1.16 N/A N/A 5.002±0.00 6.783±0.72 N/A N/A 2.493±0.09 3.935±0.00 N/A 10.774±1.69 N/A 3.294±0.00
ENSMUST00000108862 5.831±2.55 N/A N/A N/A N/A 4.933±0.00 3.985±0.78 4.432±0.79 2.947±0.91 4.142±0.72 N/A N/A N/A 3.516±0.27
ENSMUST00000132627 N/A N/A N/A 51.128±0.00 N/A N/A N/A N/A N/A N/A N/A 40.137±0.00 35.257±0.00 20.824±0.00
ENSMUST00000136590 N/A N/A 5.190±0.00 N/A N/A N/A N/A N/A N/A N/A 5.460±1.06 14.863±0.00 12.370±4.18 N/A
ENSMUST00000145629 4.318±0.39 4.374±0.66 6.078±1.84 4.826±0.71 5.040±2.02 4.804±0.89 2.301±0.00 2.166±0.00 2.867±0.44 3.156±0.64 N/A 8.064±1.98 6.161±1.32 2.207±0.54
ENSMUST00000184394 N/A N/A N/A 59.929±0.00 N/A N/A N/A N/A N/A N/A N/A 40.215±0.00 62.780±8.96 10.083±0.00
ENSMUST00000185115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.565±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045A CIL_00045A_0002 CGP 2:180934772-180982526
CIL_00045B CIL_00045B_0002 CGP 2:180967225-181017540

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005096 ISO GTPase activator activity
GO:0005515 IPI protein binding
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067809 ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 protein_coding Danio_rerio
ENSG00000101199 ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 protein_coding Homo_sapiens

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