C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000519604 ARFGAP1-202 ENSG00000101199 9606 + 20:63272785-63289789 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonENST00000519604
Transcript ID Brain Colon
ENST00000519604 4.463±0.00 2.871±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045A CIL_00045A_0001 CGP 20:63240784-63289793
CIL_00045B CIL_00045B_0001 CGP 20:63272785-63334851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IDA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0030660 TAS Golgi-associated vesicle membrane
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0044267 TAS cellular protein metabolic process
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185115 Arfgap1-009 protein_coding Mus_musculus 0 1016
ENSMUST00000136590 Arfgap1-004 processed_transcript Mus_musculus 0 907
ENSMUST00000029092 Arfgap1-001 protein_coding Mus_musculus 0 828
ENSMUST00000184394 Arfgap1-010 protein_coding Mus_musculus 0 708
ENSMUST00000108859 Arfgap1-008 protein_coding Mus_musculus 0 601
ENSMUST00000108860 Arfgap1-005 protein_coding Mus_musculus 0 601
ENSMUST00000108861 Arfgap1-006 protein_coding Mus_musculus 0 601
ENSMUST00000108862 Arfgap1-002 protein_coding Mus_musculus 0 601
ENSMUST00000145629 Arfgap1-003 retained_intron Mus_musculus 0 427
ENSMUST00000132627 Arfgap1-011 retained_intron Mus_musculus 0 320
ENSMUST00000148908 Arfgap1-015 processed_transcript Mus_musculus 0 222

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