C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00045B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101199-ENSG00000101203 CGP 9606 20:63272785-63334851
GeneTranscriptPositionBiotype
ENSG00000101199 (ARFGAP1)
ADP-ribosylation factor GTPase activating protein 1 		ENST00000353546 (ARFGAP1-003) 63272865-63289344 protein_coding
ENST00000370275 (ARFGAP1-004) 63272833-63289788 protein_coding
ENST00000370283 (ARFGAP1-001) 63272785-63289793 protein_coding
ENST00000395285 (ARFGAP1-005) 63285790-63289788 retained_intron
ENST00000468975 (ARFGAP1-009) 63284292-63289788 processed_transcript
ENST00000518601 (ARFGAP1-016) 63272864-63286398 protein_coding
ENST00000518618 (ARFGAP1-019) 63285486-63288245 processed_transcript
ENST00000518691 (ARFGAP1-018) 63284435-63286327 retained_intron
ENST00000518794 (ARFGAP1-002) 63284115-63289345 processed_transcript
ENST00000519273 (ARFGAP1-201) 63272785-63289789 protein_coding
ENST00000519531 (ARFGAP1-014) 63272829-63283528 retained_intron
ENST00000519604 (ARFGAP1-202) 63272785-63289789 protein_coding
ENST00000520022 (ARFGAP1-017) 63284308-63285949 retained_intron
ENST00000520485 (ARFGAP1-008) 63272816-63288192 nonsense_mediated_decay
ENST00000522403 (ARFGAP1-015) 63273204-63285663 protein_coding
ENST00000522959 (ARFGAP1-011) 63272802-63276742 retained_intron
ENST00000523114 (ARFGAP1-010) 63272795-63276547 protein_coding
ENST00000523460 (ARFGAP1-012) 63272813-63287844 protein_coding
ENST00000524192 (ARFGAP1-013) 63272825-63278553 retained_intron
ENST00000547204 (ARFGAP1-007) 63272797-63287937 protein_coding
ENST00000549047 (ARFGAP1-021) 63272811-63287688 protein_coding
ENST00000549076 (ARFGAP1-023) 63287656-63289130 protein_coding
ENST00000550188 (ARFGAP1-006) 63273318-63277229 protein_coding
ENSG00000101203 (COL20A1)
collagen, type XX, alpha 1 		ENST00000358894 (COL20A1-006) 63293186-63330933 protein_coding
ENST00000415763 (COL20A1-004) 63319086-63328498 protein_coding
ENST00000422202 (COL20A1-001) 63295040-63334851 protein_coding
ENST00000455906 (COL20A1-009) 63320099-63328479 protein_coding
ENST00000471582 (COL20A1-002) 63324313-63330933 retained_intron
ENST00000479501 (COL20A1-005) 63293224-63330933 retained_intron
ENST00000494913 (COL20A1-007) 63327202-63330933 retained_intron
ENST00000496810 (COL20A1-008) 63329153-63330933 processed_transcript
CIL_00045B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027575-ENSMUSG00000016356 CGP 10090 2:180967225-181017540
GeneTranscriptPositionBiotype
ENSMUSG00000016356 (Col20a1)
collagen, type XX, alpha 1 		ENSMUST00000108856 (Col20a1-001) 180986535-181017540 protein_coding
ENSMUST00000149179 (Col20a1-002) 180986535-181016328 protein_coding
ENSMUST00000152473 (Col20a1-003) 181000454-181003458 nonsense_mediated_decay
ENSMUST00000155425 (Col20a1-004) 181013240-181017540 protein_coding
ENSMUSG00000027575 (Arfgap1)
ADP-ribosylation factor GTPase activating protein 1 		ENSMUST00000029092 (Arfgap1-001) 180967234-180982526 protein_coding
ENSMUST00000108859 (Arfgap1-008) 180967300-180982311 protein_coding
ENSMUST00000108860 (Arfgap1-005) 180967277-180982460 protein_coding
ENSMUST00000108861 (Arfgap1-006) 180967245-180981700 protein_coding
ENSMUST00000108862 (Arfgap1-002) 180967225-180982458 protein_coding
ENSMUST00000132627 (Arfgap1-011) 180967279-180972929 retained_intron
ENSMUST00000134519 (Arfgap1-012) 180973831-180977524 retained_intron
ENSMUST00000136590 (Arfgap1-004) 180967267-180982446 processed_transcript
ENSMUST00000138706 (Arfgap1-013) 180973486-180976752 retained_intron
ENSMUST00000145629 (Arfgap1-003) 180967265-180982460 retained_intron
ENSMUST00000148908 (Arfgap1-015) 180980349-180981397 processed_transcript
ENSMUST00000150507 (Arfgap1-014) 180973503-180978042 retained_intron
ENSMUST00000184394 (Arfgap1-010) 180971055-180981370 protein_coding
ENSMUST00000185115 (Arfgap1-009) 180971040-180981473 protein_coding
ENSMUSG00000070461 (9230112E08Rik)
RIKEN cDNA 9230112E08 gene 		ENSMUST00000094214 (9230112E08Rik-201) 180984232-180985591 sense_overlapping
ENSMUST00000189441 (9230112E08Rik-001) 180983924-180987275 sense_overlapping

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00045B_0001ENSG00000101199ENST00000353546ENST00000370275ENST00000370283ENST00000395285ENST00000468975ENST00000518691ENST00000518794ENST00000519273ENST00000519531ENST00000519604ENST00000520485ENST00000522403ENST00000522959ENST00000524192ENST00000549076ENSG00000101203ENST00000358894ENST00000415763ENST00000422202ENST00000471582ENST00000479501ENST00000494913ENST00000496810CIL_00045B_0002ENSMUSG00000016356ENSMUST00000108856ENSMUST00000155425ENSMUSG00000027575ENSMUST00000029092ENSMUST00000108859ENSMUST00000108860ENSMUST00000108861ENSMUST00000108862ENSMUST00000132627ENSMUST00000136590ENSMUST00000145629ENSMUST00000184394ENSMUST00000185115ENSMUSG00000070461ENSMUST00000094214ENSMUST00000189441
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101199 ENST00000353546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A N/A
ENST00000370275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.497±0.00 N/A N/A
ENST00000370283 6.194±0.00 N/A N/A 7.559±0.00 3.334±2.36 5.943±0.00 1.695±0.00 10.336±0.00 2.265±0.00 0.977±0.00 0.378±0.00 16.990±5.06 17.863±2.33 21.390±3.95
ENST00000395285 N/A 3.524±0.00 N/A N/A N/A N/A N/A 3.659±0.00 0.954±0.00 N/A N/A 12.631±3.30 N/A N/A
ENST00000468975 N/A 6.866±0.00 N/A N/A 2.795±0.00 2.112±1.62 N/A 4.079±0.00 1.865±0.00 5.745±0.00 N/A 11.838±0.00 5.301±0.82 N/A
ENST00000518601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518691 N/A N/A N/A N/A N/A 2.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518794 2.487±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.624±2.98 N/A N/A
ENST00000519273 N/A 4.238±0.00 N/A N/A N/A 0.378±0.00 0.339±0.00 1.397±0.00 N/A N/A N/A N/A N/A N/A
ENST00000519531 N/A N/A N/A N/A N/A N/A N/A 1.457±0.00 N/A N/A 2.054±0.00 N/A N/A N/A
ENST00000519604 N/A N/A N/A 4.463±0.00 N/A 2.871±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520485 N/A N/A N/A N/A 1.691±0.00 N/A N/A N/A 1.454±0.00 N/A N/A 2.045±0.00 N/A N/A
ENST00000522403 N/A N/A N/A 3.010±0.00 N/A 0.910±0.00 0.858±0.00 N/A N/A N/A 1.517±0.44 N/A N/A N/A
ENST00000522959 N/A N/A 2.782±0.00 4.141±0.00 5.515±0.00 2.956±0.00 N/A 5.760±0.00 6.698±0.00 N/A N/A 9.977±0.00 14.476±0.00 58.480±0.00
ENST00000523114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524192 N/A N/A N/A N/A 2.671±0.00 N/A N/A N/A N/A 1.647±0.00 N/A N/A N/A N/A
ENST00000547204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549076 8.476±0.00 11.161±0.00 N/A 13.513±0.00 11.298±0.00 13.963±0.00 N/A N/A 5.319±0.00 N/A 2.691±0.00 26.608±0.00 N/A 22.074±0.00
ENST00000550188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101203 ENST00000358894 N/A N/A N/A 0.617±0.00 N/A N/A N/A N/A N/A N/A N/A 0.049±0.02 N/A N/A
ENST00000415763 N/A N/A N/A 0.535±0.00 N/A N/A N/A N/A N/A N/A N/A 0.145±0.06 N/A N/A
ENST00000422202 0.003±0.00 0.046±0.00 N/A 0.026±0.00 0.014±0.00 0.009±0.00 0.003±0.00 0.007±0.00 N/A 0.003±0.00 N/A 0.012±0.01 N/A N/A
ENST00000455906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471582 N/A N/A N/A 0.213±0.00 N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A 0.288±0.00
ENST00000479501 N/A N/A N/A 0.298±0.23 N/A N/A N/A N/A N/A N/A N/A 0.087±0.00 N/A 0.516±0.30
ENST00000494913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.820±1.83
ENST00000496810 N/A N/A N/A N/A N/A N/A N/A 0.122±0.00 N/A N/A N/A 0.124±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016356 ENSMUST00000108856 N/A 1.114±0.38 2.067±0.05 0.511±0.24 0.635±0.27 1.645±0.79 N/A 0.301±0.15 0.231±0.11 1.270±0.43 N/A 2.487±1.24 1.720±1.89 5.804±2.78
ENSMUST00000149179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.472±7.46
ENSMUSG00000027575 ENSMUST00000029092 10.395±3.31 10.104±3.29 16.195±3.60 13.557±0.00 9.927±1.35 14.496±2.04 4.482±0.65 7.101±0.76 8.863±2.31 8.121±1.84 5.460±1.11 14.669±4.34 20.460±4.42 7.912±3.46
ENSMUST00000108859 N/A N/A N/A N/A N/A N/A N/A 2.696±0.00 N/A 3.103±0.33 N/A N/A N/A 2.063±0.00
ENSMUST00000108860 5.967±1.36 N/A N/A 16.946±2.88 6.019±0.00 N/A 3.640±0.42 4.820±0.74 N/A 4.433±0.00 N/A N/A N/A N/A
ENSMUST00000108861 N/A 8.337±1.16 N/A N/A 5.002±0.00 6.783±0.72 N/A N/A 2.493±0.09 3.935±0.00 N/A 10.774±1.69 N/A 3.294±0.00
ENSMUST00000108862 5.831±2.55 N/A N/A N/A N/A 4.933±0.00 3.985±0.78 4.432±0.79 2.947±0.91 4.142±0.72 N/A N/A N/A 3.516±0.27
ENSMUST00000132627 N/A N/A N/A 51.128±0.00 N/A N/A N/A N/A N/A N/A N/A 40.137±0.00 35.257±0.00 20.824±0.00
ENSMUST00000134519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136590 N/A N/A 5.190±0.00 N/A N/A N/A N/A N/A N/A N/A 5.460±1.06 14.863±0.00 12.370±4.18 N/A
ENSMUST00000138706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145629 4.318±0.39 4.374±0.66 6.078±1.84 4.826±0.71 5.040±2.02 4.804±0.89 2.301±0.00 2.166±0.00 2.867±0.44 3.156±0.64 N/A 8.064±1.98 6.161±1.32 2.207±0.54
ENSMUST00000148908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184394 N/A N/A N/A 59.929±0.00 N/A N/A N/A N/A N/A N/A N/A 40.215±0.00 62.780±8.96 10.083±0.00
ENSMUST00000185115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.565±0.00
ENSMUSG00000070461 ENSMUST00000094214 N/A N/A N/A 4.026±0.00 N/A N/A N/A N/A N/A N/A N/A 2.056±0.00 0.780±0.00 N/A
ENSMUST00000189441 1.181±0.36 1.522±0.31 2.418±0.18 1.606±0.01 1.923±0.42 1.999±0.49 N/A 0.691±0.20 0.660±0.14 1.784±0.65 N/A 2.647±0.65 0.948±0.58 N/A

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