C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520485 ARFGAP1-008 ENSG00000101199 9606 + 20:63272816-63288192 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverOvaryENST00000520485
Transcript ID Breast Liver Ovary
ENST00000520485 1.691±0.00 1.454±0.00 2.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045A CIL_00045A_0001 CGP 20:63240784-63289793
CIL_00045B CIL_00045B_0001 CGP 20:63272785-63334851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136590 Arfgap1-004 processed_transcript Mus_musculus 0 702
ENSMUST00000029092 Arfgap1-001 protein_coding Mus_musculus 0 702
ENSMUST00000145629 Arfgap1-003 retained_intron Mus_musculus 0 616
ENSMUST00000185115 Arfgap1-009 protein_coding Mus_musculus 0 564
ENSMUST00000132627 Arfgap1-011 retained_intron Mus_musculus 0 457
ENSMUST00000108860 Arfgap1-005 protein_coding Mus_musculus 0 457
ENSMUST00000108862 Arfgap1-002 protein_coding Mus_musculus 0 457
ENSMUST00000108859 Arfgap1-008 protein_coding Mus_musculus 0 453
ENSMUST00000108861 Arfgap1-006 protein_coding Mus_musculus 0 453
ENSMUST00000184394 Arfgap1-010 protein_coding Mus_musculus 0 449
ENSMUST00000148908 Arfgap1-015 processed_transcript Mus_musculus 0 230

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