C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec23 homolog B (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101310 SEC23B 9606 + 20:18507493-18561415 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262544 SEC23B-005 18507555-18561122 protein_coding
  ENST00000336714 SEC23B-003 18507555-18561415 protein_coding
  ENST00000377465 SEC23B-004 18508062-18561415 protein_coding
  ENST00000377475 SEC23B-002 18507579-18561415 protein_coding
  ENST00000422877 SEC23B-008 18542368-18560833 protein_coding
  ENST00000450074 SEC23B-001 18507493-18526531 protein_coding
  ENST00000474619 SEC23B-006 18507933-18510931 processed_transcript
  ENST00000494645 SEC23B-007 18510977-18515984 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262544ENST00000336714ENST00000377475ENST00000422877
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262544 4.799±0.00 5.387±0.00 N/A 7.606±0.00 N/A 3.297±0.00 1.955±0.00 11.838±10.13 5.617±0.00 6.692±0.00 0.529±0.04 8.065±0.11 8.601±2.23 15.607±0.45
ENST00000336714 0.854±0.00 N/A N/A 2.050±0.00 N/A 1.018±0.00 0.541±0.15 N/A 1.350±0.26 2.260±0.00 0.219±0.00 3.646±0.74 2.028±0.00 N/A
ENST00000377475 N/A N/A 2.076±0.00 3.328±0.00 4.981±0.00 N/A N/A 1.536±0.00 3.617±0.00 1.599±0.00 N/A 4.039±1.76 1.839±0.11 2.688±0.00
ENST00000422877 6.335±0.00 10.590±0.00 N/A 19.086±0.00 10.442±0.00 5.701±0.00 N/A 36.002±0.00 10.018±0.00 17.258±0.00 0.638±0.00 9.637±0.00 6.919±0.00 25.791±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MU CIL_0002MU_0001 CGP 20:18486540-18561415
CIL_0000YA CIL_0000YA_0001 CGP 20:18507493-18569563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012505 IDA endomembrane system
GO:0016020 TAS membrane
GO:0016192 TAS vesicle-mediated transport
GO:0030127 IEA COPII vesicle coat
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019360 sec23b Sec23 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000027429 Sec23b SEC23B (S. cerevisiae) protein_coding Mus_musculus

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