C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002MU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000089050-ENSG00000101310 CGP 9606 20:18486540-18561415
GeneTranscriptPositionBiotype
ENSG00000089050 (RBBP9)
retinoblastoma binding protein 9 		ENST00000337227 (RBBP9-001) 18486540-18497243 protein_coding
ENST00000491835 (RBBP9-004) 18489459-18497174 processed_transcript
ENST00000493184 (RBBP9-003) 18489288-18497180 processed_transcript
ENST00000622282 (RBBP9-201) 18489802-18497167 protein_coding
ENSG00000101310 (SEC23B)
Sec23 homolog B (S. cerevisiae) 		ENST00000262544 (SEC23B-005) 18507555-18561122 protein_coding
ENST00000336714 (SEC23B-003) 18507555-18561415 protein_coding
ENST00000377465 (SEC23B-004) 18508062-18561415 protein_coding
ENST00000377475 (SEC23B-002) 18507579-18561415 protein_coding
ENST00000422877 (SEC23B-008) 18542368-18560833 protein_coding
ENST00000450074 (SEC23B-001) 18507493-18526531 protein_coding
ENST00000474619 (SEC23B-006) 18507933-18510931 processed_transcript
ENST00000494645 (SEC23B-007) 18510977-18515984 processed_transcript
ENSG00000214612 (RPS19P1)
ribosomal protein S19 pseudogene 1 		ENST00000415286 (RPS19P1-001) 18504633-18505066 processed_pseudogene
ENSG00000264134 (AL121893.1)
 ENST00000578930 (AL121893.1-201) 18545708-18545784 miRNA
CIL_0002MU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027428-ENSMUSG00000027429 CGP 10090 2:144542265-144590749
GeneTranscriptPositionBiotype
ENSMUSG00000027428 (Rbbp9)
retinoblastoma binding protein 9 		ENSMUST00000028915 (Rbbp9-001) 144542265-144550869 protein_coding
ENSMUST00000140340 (Rbbp9-002) 144543821-144550790 processed_transcript
ENSMUSG00000027429 (Sec23b)
SEC23B (S. cerevisiae) 		ENSMUST00000028916 (Sec23b-001) 144556256-144590749 protein_coding
ENSMUST00000128210 (Sec23b-003) 144564899-144590749 processed_transcript
ENSMUST00000143573 (Sec23b-005) 144556229-144568027 protein_coding
ENSMUST00000143921 (Sec23b-007) 144556312-144559505 processed_transcript
ENSMUST00000146487 (Sec23b-002) 144577123-144581115 processed_transcript
ENSMUST00000149697 (Sec23b-006) 144556334-144564652 protein_coding
ENSMUST00000155258 (Sec23b-004) 144556281-144559396 protein_coding
ENSMUST00000155876 (Sec23b-008) 144556319-144566810 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MU_0001ENSG00000089050ENST00000337227ENST00000491835ENST00000493184ENST00000622282ENSG00000101310ENST00000262544ENST00000336714ENST00000377465ENST00000377475ENST00000422877ENST00000450074ENST00000474619ENST00000494645ENSG00000214612ENST00000415286ENSG00000264134ENST00000578930CIL_0002MU_0002ENSMUSG00000027428ENSMUST00000028915ENSMUST00000140340ENSMUSG00000027429ENSMUST00000028916ENSMUST00000128210ENSMUST00000143573ENSMUST00000143921ENSMUST00000146487ENSMUST00000149697ENSMUST00000155258ENSMUST00000155876
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MU_0001ENSG00000089050ENST00000337227ENST00000493184ENST00000622282ENSG00000101310ENST00000262544ENST00000336714ENST00000377475ENST00000422877ENSG00000214612ENST00000415286ENSG00000264134ENST00000578930CIL_0002MU_0002ENSMUSG00000027428ENSMUST00000028915ENSMUST00000140340ENSMUSG00000027429ENSMUST00000028916ENSMUST00000128210ENSMUST00000143573
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089050 ENST00000337227 2.472±0.00 4.032±0.00 0.457±0.00 2.923±0.00 2.178±0.91 0.997±0.08 0.876±0.57 4.515±1.09 1.539±0.42 1.766±0.20 0.086±0.00 1.869±0.42 1.934±0.31 2.204±1.68
ENST00000491835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493184 N/A N/A N/A N/A 1.187±0.00 N/A N/A 2.983±0.00 N/A N/A N/A N/A N/A N/A
ENST00000622282 N/A N/A N/A 5.647±0.00 N/A 1.545±0.00 0.936±0.00 N/A 5.005±0.00 N/A 1.212±0.00 4.063±0.00 N/A N/A
ENSG00000101310 ENST00000262544 4.799±0.00 5.387±0.00 N/A 7.606±0.00 N/A 3.297±0.00 1.955±0.00 11.838±10.13 5.617±0.00 6.692±0.00 0.529±0.04 8.065±0.11 8.601±2.23 15.607±0.45
ENST00000336714 0.854±0.00 N/A N/A 2.050±0.00 N/A 1.018±0.00 0.541±0.15 N/A 1.350±0.26 2.260±0.00 0.219±0.00 3.646±0.74 2.028±0.00 N/A
ENST00000377465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000377475 N/A N/A 2.076±0.00 3.328±0.00 4.981±0.00 N/A N/A 1.536±0.00 3.617±0.00 1.599±0.00 N/A 4.039±1.76 1.839±0.11 2.688±0.00
ENST00000422877 6.335±0.00 10.590±0.00 N/A 19.086±0.00 10.442±0.00 5.701±0.00 N/A 36.002±0.00 10.018±0.00 17.258±0.00 0.638±0.00 9.637±0.00 6.919±0.00 25.791±0.00
ENST00000450074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214612 ENST00000415286 0.242±0.00 0.267±0.00 N/A 0.079±0.00 0.409±0.26 0.133±0.00 N/A 0.146±0.00 N/A 0.647±0.36 0.238±0.00 0.241±0.10 0.233±0.00 0.247±0.12
ENSG00000264134 ENST00000578930 N/A N/A N/A N/A 0.759±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027428 ENSMUST00000028915 16.857±4.12 10.753±1.25 14.899±0.96 10.022±6.03 8.045±1.06 5.749±1.04 3.999±0.44 20.551±3.17 5.887±1.69 12.900±0.93 1.974±0.36 18.715±5.65 7.196±3.69 1.519±0.62
ENSMUST00000140340 N/A N/A N/A 1.780±0.00 N/A N/A N/A N/A N/A N/A N/A 2.182±0.00 N/A 0.645±0.00
ENSMUSG00000027429 ENSMUST00000028916 16.022±9.85 6.451±1.41 8.716±2.91 6.223±3.14 5.484±0.62 5.978±1.52 3.024±0.48 12.662±2.39 8.489±3.60 9.742±1.26 1.095±0.47 14.428±6.91 14.596±7.06 5.237±2.42
ENSMUST00000128210 5.281±2.75 16.959±4.45 4.930±0.00 8.606±1.77 4.914±1.57 13.744±3.02 N/A 9.648±3.52 8.417±2.93 5.682±1.29 0.680±0.00 21.135±7.17 8.868±3.61 4.543±1.21
ENSMUST00000143573 N/A N/A 7.376±0.00 6.063±0.00 N/A N/A N/A N/A 5.274±0.00 N/A N/A N/A 15.872±0.73 N/A
ENSMUST00000143921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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