C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC23B (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027429 Sec23b 10090 + 2:144556229-144590749 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028916 Sec23b-001 144556256-144590749 protein_coding
  ENSMUST00000128210 Sec23b-003 144564899-144590749 processed_transcript
  ENSMUST00000143573 Sec23b-005 144556229-144568027 protein_coding
  ENSMUST00000143921 Sec23b-007 144556312-144559505 processed_transcript
  ENSMUST00000146487 Sec23b-002 144577123-144581115 processed_transcript
  ENSMUST00000149697 Sec23b-006 144556334-144564652 protein_coding
  ENSMUST00000155258 Sec23b-004 144556281-144559396 protein_coding
  ENSMUST00000155876 Sec23b-008 144556319-144566810 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028916ENSMUST00000128210ENSMUST00000143573
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028916 16.022±9.85 6.451±1.41 8.716±2.91 6.223±3.14 5.484±0.62 5.978±1.52 3.024±0.48 12.662±2.39 8.489±3.60 9.742±1.26 1.095±0.47 14.428±6.91 14.596±7.06 5.237±2.42
ENSMUST00000128210 5.281±2.75 16.959±4.45 4.930±0.00 8.606±1.77 4.914±1.57 13.744±3.02 N/A 9.648±3.52 8.417±2.93 5.682±1.29 0.680±0.00 21.135±7.17 8.868±3.61 4.543±1.21
ENSMUST00000143573 N/A N/A 7.376±0.00 6.063±0.00 N/A N/A N/A N/A 5.274±0.00 N/A N/A N/A 15.872±0.73 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MU CIL_0002MU_0002 CGP 2:144542265-144590749
CIL_0000YA CIL_0000YA_0002 CGP 2:144556229-144595366

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012505 IEA endomembrane system
GO:0030127 IEA COPII vesicle coat
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019360 sec23b Sec23 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSG00000101310 SEC23B Sec23 homolog B (S. cerevisiae) protein_coding Homo_sapiens

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