C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec23 homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336714 SEC23B-003 ENSG00000101310 9606 + 20:18507555-18561415 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLiverLungMuscleOvaryPlacentaENST00000336714
Transcript ID Adipose Brain Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000336714 0.854±0.00 2.050±0.00 1.018±0.00 0.541±0.15 1.350±0.26 2.260±0.00 0.219±0.00 3.646±0.74 2.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MU CIL_0002MU_0001 CGP 20:18486540-18561415
CIL_0000YA CIL_0000YA_0001 CGP 20:18507493-18569563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012505 IDA endomembrane system
GO:0016020 TAS membrane
GO:0016192 TAS vesicle-mediated transport
GO:0030127 IEA COPII vesicle coat
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028916 Sec23b-001 protein_coding Mus_musculus 0 3120
ENSMUST00000128210 Sec23b-003 processed_transcript Mus_musculus 0 2639
ENSMUST00000143573 Sec23b-005 protein_coding Mus_musculus 0 1160
ENSMUST00000155876 Sec23b-008 protein_coding Mus_musculus 0 549

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