C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane 9 superfamily protein member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101337 TM9SF4 9606 + 20:32109506-32167258 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000217315 TM9SF4-001 32109736-32167258 protein_coding
  ENST00000398022 TM9SF4-002 32109506-32167258 protein_coding
  ENST00000417389 TM9SF4-007 32109767-32141606 nonsense_mediated_decay
  ENST00000442842 TM9SF4-006 32109717-32141785 nonsense_mediated_decay
  ENST00000450829 TM9SF4-005 32109728-32141827 nonsense_mediated_decay
  ENST00000479591 TM9SF4-008 32161093-32165587 retained_intron
  ENST00000495749 TM9SF4-004 32159143-32167258 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000217315ENST00000398022
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000217315 11.655±0.00 8.857±0.00 N/A 5.636±4.10 8.919±0.00 1.983±0.00 9.309±0.00 7.742±0.00 12.999±0.00 16.072±0.00 14.935±0.00 14.224±7.05 15.924±1.47 7.856±1.35
ENST00000398022 7.072±0.00 8.218±0.00 2.090±0.00 5.914±0.74 7.050±0.62 7.171±1.93 1.766±0.00 7.438±1.54 4.343±0.00 2.664±0.00 N/A 12.430±8.33 12.347±2.65 6.472±4.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071A CIL_00071A_0002 CGP 20:32052188-32167258
CIL_00071B CIL_00071B_0002 CGP 20:32109506-32207791

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002536 tm9sf4 transmembrane 9 superfamily protein member 4 protein_coding Danio_rerio
ENSMUSG00000068040 Tm9sf4 transmembrane 9 superfamily protein member 4 protein_coding Mus_musculus

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