C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDK5 regulatory subunit associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101391 CDK5RAP1 9606 - 20:33358839-33401561 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339269 CDK5RAP1-012 33358839-33401561 protein_coding
  ENST00000346416 CDK5RAP1-010 33358839-33401561 protein_coding
  ENST00000357886 CDK5RAP1-011 33358839-33401561 protein_coding
  ENST00000427097 CDK5RAP1-007 33358839-33387533 protein_coding
  ENST00000460043 CDK5RAP1-003 33366908-33401508 processed_transcript
  ENST00000461356 CDK5RAP1-015 33379461-33401486 processed_transcript
  ENST00000461710 CDK5RAP1-014 33358841-33373359 retained_intron
  ENST00000471264 CDK5RAP1-006 33370499-33401452 processed_transcript
  ENST00000473791 CDK5RAP1-008 33373601-33379588 retained_intron
  ENST00000473997 CDK5RAP1-013 33358839-33401517 protein_coding
  ENST00000477105 CDK5RAP1-016 33374115-33401505 processed_transcript
  ENST00000481964 CDK5RAP1-001 33358839-33401479 processed_transcript
  ENST00000482967 CDK5RAP1-005 33358839-33401504 processed_transcript
  ENST00000488723 CDK5RAP1-004 33379513-33401523 processed_transcript
  ENST00000496381 CDK5RAP1-002 33360351-33401478 processed_transcript
  ENST00000498525 CDK5RAP1-009 33358845-33387504 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339269ENST00000346416ENST00000357886ENST00000427097ENST00000460043ENST00000461356ENST00000461710ENST00000471264ENST00000473997ENST00000477105ENST00000482967ENST00000488723ENST00000496381ENST00000498525
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339269 N/A N/A N/A N/A N/A N/A N/A 2.904±0.00 0.882±0.00 3.258±0.00 N/A N/A N/A N/A
ENST00000346416 4.173±0.00 N/A N/A 2.931±1.32 2.116±1.31 1.517±0.51 1.999±1.65 N/A 1.476±0.00 N/A 1.681±0.60 4.233±0.81 2.421±0.45 3.645±1.00
ENST00000357886 N/A N/A 0.785±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.719±0.00 N/A N/A N/A
ENST00000460043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.596±0.00 N/A N/A N/A
ENST00000461356 N/A N/A 2.012±0.00 N/A N/A N/A N/A N/A 1.802±0.00 N/A 5.463±0.00 N/A N/A N/A
ENST00000461710 N/A 1.632±0.00 0.410±0.00 0.720±0.18 N/A N/A N/A N/A N/A 0.619±0.00 0.597±0.00 1.434±0.00 N/A 1.797±0.00
ENST00000471264 N/A N/A N/A 3.462±0.00 2.302±0.00 2.427±0.00 2.618±0.00 N/A 2.713±0.00 N/A 4.066±0.00 N/A N/A N/A
ENST00000473997 N/A N/A N/A N/A N/A N/A N/A N/A 1.980±0.00 N/A N/A 3.021±0.25 3.302±0.00 N/A
ENST00000477105 N/A N/A 1.057±0.00 2.087±0.00 1.896±0.00 N/A N/A N/A 1.730±0.00 1.561±0.00 N/A 2.809±0.00 N/A N/A
ENST00000482967 N/A 9.077±0.00 N/A N/A 5.130±0.00 2.109±0.00 1.125±0.00 N/A 2.564±0.00 N/A 5.075±0.00 7.250±1.38 4.693±0.21 5.362±0.00
ENST00000488723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.790±0.00 6.676±0.00 7.419±0.00
ENST00000496381 4.554±0.00 6.583±0.00 2.045±0.00 3.268±1.07 N/A 1.915±0.00 2.594±1.91 4.346±0.15 2.017±0.00 2.048±0.00 3.557±0.00 7.738±4.12 4.586±0.00 6.273±0.06
ENST00000498525 N/A N/A 2.452±0.00 N/A N/A N/A N/A 3.397±0.00 N/A 2.670±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000521 CIL_000521_0001 CGP 20:33358839-33443892

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0003824 IEA catalytic activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006400 IEA tRNA modification
GO:0007420 NAS brain development
GO:0009451 IEA RNA modification
GO:0016740 IEA transferase activity
GO:0019901 NAS protein kinase binding
GO:0032403 IEA protein complex binding
GO:0043412 IEA macromolecule modification
GO:0045664 NAS regulation of neuron differentiation
GO:0045736 IDA negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0046872 IEA metal ion binding
GO:0051536 IEA iron-sulfur cluster binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044925 CDK5RAP1 CDK5 regulatory subunit associated protein 1 protein_coding Danio_rerio
ENSMUSG00000027487 Cdk5rap1 CDK5 regulatory subunit associated protein 1 protein_coding Mus_musculus

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