C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346416 CDK5RAP1-010 ENSG00000101391 9606 - 20:33358839-33401561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000346416
Transcript ID Adipose Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000346416 4.173±0.00 2.931±1.32 2.116±1.31 1.517±0.51 1.999±1.65 1.476±0.00 1.681±0.60 4.233±0.81 2.421±0.45 3.645±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000521 CIL_000521_0001 CGP 20:33358839-33443892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0003824 IEA catalytic activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006400 IEA tRNA modification
GO:0007420 NAS brain development
GO:0009451 IEA RNA modification
GO:0016740 IEA transferase activity
GO:0019901 NAS protein kinase binding
GO:0032403 IEA protein complex binding
GO:0043412 IEA macromolecule modification
GO:0045664 NAS regulation of neuron differentiation
GO:0045736 IDA negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0046872 IEA metal ion binding
GO:0051536 IEA iron-sulfur cluster binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028990 Cdk5rap1-201 protein_coding Mus_musculus 0 1886
ENSMUST00000109731 Cdk5rap1-001 protein_coding Mus_musculus 0 1886
ENSMUST00000148289 Cdk5rap1-002 processed_transcript Mus_musculus 0 1365
ENSMUST00000152180 Cdk5rap1-006 retained_intron Mus_musculus 0 593
ENSMUST00000109730 Cdk5rap1-003 protein_coding Mus_musculus 0 542
ENSMUST00000150308 Cdk5rap1-004 processed_transcript Mus_musculus 0 477

Loading