C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDK5 regulatory subunit associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027487 Cdk5rap1 10090 - 2:154335380-154373010 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028990 Cdk5rap1-201 154335386-154372719 protein_coding
  ENSMUST00000109730 Cdk5rap1-003 154361250-154372731 protein_coding
  ENSMUST00000109731 Cdk5rap1-001 154335380-154373010 protein_coding
  ENSMUST00000137918 Cdk5rap1-005 154370674-154372691 processed_transcript
  ENSMUST00000148289 Cdk5rap1-002 154342301-154372761 processed_transcript
  ENSMUST00000150308 Cdk5rap1-004 154365833-154370781 processed_transcript
  ENSMUST00000152180 Cdk5rap1-006 154350522-154354344 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028990ENSMUST00000109730ENSMUST00000109731ENSMUST00000148289ENSMUST00000150308ENSMUST00000152180
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028990 3.657±0.36 2.863±0.66 3.708±1.18 2.688±0.60 2.900±0.61 2.557±0.36 2.882±0.45 4.666±0.77 4.406±1.27 2.094±0.60 3.046±0.39 3.563±0.92 3.220±1.30 1.883±0.36
ENSMUST00000109730 N/A N/A N/A N/A 1.218±0.00 N/A N/A N/A N/A N/A N/A 2.141±0.00 N/A N/A
ENSMUST00000109731 0.558±0.00 N/A N/A 0.647±0.00 N/A N/A 1.072±0.00 N/A N/A N/A 0.706±0.22 0.602±0.00 N/A N/A
ENSMUST00000148289 N/A 1.516±0.00 N/A N/A N/A 0.703±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150308 N/A N/A N/A 7.024±0.00 N/A N/A N/A N/A N/A N/A N/A 6.165±0.00 9.051±0.25 1.171±0.00
ENSMUST00000152180 1.597±0.35 2.116±0.62 N/A 1.894±0.26 1.725±0.17 2.018±0.17 1.635±0.04 N/A 2.194±0.37 2.214±0.04 N/A 3.164±0.73 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000521 CIL_000521_0002 CGP 2:154335380-154408099

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 ISS regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0003824 IEA catalytic activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006400 IEA tRNA modification
GO:0009451 IEA RNA modification
GO:0016740 IEA transferase activity
GO:0032403 IEA protein complex binding
GO:0045736 ISS negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044925 CDK5RAP1 CDK5 regulatory subunit associated protein 1 protein_coding Danio_rerio
ENSG00000101391 CDK5RAP1 CDK5 regulatory subunit associated protein 1 protein_coding Homo_sapiens

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