C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: microtubule-associated protein 1 light chain 3 alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101460 MAP1LC3A 9606 + 20:34546854-34560345 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360668 MAP1LC3A-002 34558108-34560345 protein_coding
  ENST00000374837 MAP1LC3A-001 34546854-34560345 protein_coding
  ENST00000397709 MAP1LC3A-003 34558718-34560345 protein_coding
  ENST00000476428 MAP1LC3A-004 34558775-34560345 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360668ENST00000397709ENST00000476428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360668 N/A N/A N/A 3.794±0.00 0.813±0.00 N/A 0.801±0.00 1.255±0.00 N/A 1.004±0.00 0.620±0.00 8.465±7.13 N/A 20.002±0.00
ENST00000397709 14.906±0.00 11.137±0.00 1.386±0.00 27.737±14.30 10.298±9.61 19.976±0.00 19.152±0.00 7.755±6.71 2.190±0.90 21.026±20.54 7.830±4.43 20.198±4.49 12.408±3.04 22.300±6.34
ENST00000476428 23.326±0.00 28.832±0.00 0.614±0.00 48.696±0.00 29.276±0.00 31.626±0.00 16.277±0.00 16.590±0.00 5.566±0.00 41.026±0.00 8.948±0.00 23.123±8.39 10.845±3.72 42.135±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0001 VISTA 20:33968769-34569610
CIL_0006S0 CIL_0006S0_0002 CGP 20:34516409-34560345
CIL_0005BD CIL_0005BD_0001 CGP 20:34546854-34677090

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 ISS:IEA autophagic vacuole assembly
GO:0000421 IEA autophagic vacuole membrane
GO:0000422 IGI mitochondrion degradation
GO:0005515 IPI protein binding
GO:0005543 IDA phospholipid binding
GO:0005737 IEA cytoplasm
GO:0005770 IEA late endosome
GO:0005776 IDA autophagic vacuole
GO:0005829 IDA cytosol
GO:0005874 IEA microtubule
GO:0006914 IEA autophagy
GO:0008429 IDA phosphatidylethanolamine binding
GO:0031090 IDA organelle membrane
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033609 map1lc3a microtubule-associated protein 1 light chain 3 alpha protein_coding Danio_rerio
ENSMUSG00000027602 Map1lc3a microtubule-associated protein 1 light chain 3 alpha protein_coding Mus_musculus

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