C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005BD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101460-ENSG00000101464 CGP 9606 20:34546854-34677090
GeneTranscriptPositionBiotype
ENSG00000101460 (MAP1LC3A)
microtubule-associated protein 1 light chain 3 alpha 		ENST00000360668 (MAP1LC3A-002) 34558108-34560345 protein_coding
ENST00000374837 (MAP1LC3A-001) 34546854-34560345 protein_coding
ENST00000397709 (MAP1LC3A-003) 34558718-34560345 protein_coding
ENST00000476428 (MAP1LC3A-004) 34558775-34560345 processed_transcript
ENSG00000101464 (PIGU)
phosphatidylinositol glycan anchor biosynthesis, class U 		ENST00000217446 (PIGU-001) 34560542-34677085 protein_coding
ENST00000374820 (PIGU-201) 34560866-34677085 protein_coding
ENST00000438215 (PIGU-004) 34560903-34616093 protein_coding
ENST00000462389 (PIGU-003) 34643567-34677090 retained_intron
ENST00000480175 (PIGU-002) 34579019-34634703 processed_transcript
ENSG00000273561 (AL118520.1)
 ENST00000585000 (AL118520.1-201) 34654122-34654214 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005BD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027602-ENSMUSG00000038383 CGP 10090 2:155276297-155357430
GeneTranscriptPositionBiotype
ENSMUSG00000027602 (Map1lc3a)
microtubule-associated protein 1 light chain 3 alpha 		ENSMUST00000029128 (Map1lc3a-001) 155276297-155278073 protein_coding
ENSMUST00000145086 (Map1lc3a-002) 155276543-155278070 processed_transcript
ENSMUST00000154596 (Map1lc3a-003) 155276889-155278068 processed_transcript
ENSMUSG00000038383 (Pigu)
phosphatidylinositol glycan anchor biosynthesis, class U 		ENSMUST00000077626 (Pigu-001) 155278243-155357430 protein_coding
ENSMUST00000124419 (Pigu-002) 155332646-155357419 retained_intron
ENSMUST00000125334 (Pigu-004) 155301266-155304692 processed_transcript
ENSMUST00000139854 (Pigu-003) 155278243-155301302 processed_transcript
ENSMUST00000165234 (Pigu-201) 155278244-155357424 protein_coding
ENSMUSG00000076216 (Mir695)
microRNA 695 		ENSMUST00000102261 (Mir695-201) 155356817-155356925 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BD_0001ENSG00000101460ENST00000360668ENST00000374837ENST00000397709ENST00000476428ENSG00000101464ENST00000217446ENST00000374820ENST00000438215ENST00000462389ENST00000480175ENSG00000273561ENST00000585000CIL_0005BD_0002ENSMUSG00000027602ENSMUST00000029128ENSMUST00000145086ENSMUST00000154596ENSMUSG00000038383ENSMUST00000077626ENSMUST00000124419ENSMUST00000125334ENSMUST00000139854ENSMUST00000165234ENSMUSG00000076216ENSMUST00000102261
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BD_0001ENSG00000101460ENST00000360668ENST00000397709ENST00000476428ENSG00000101464ENST00000217446ENST00000374820ENST00000438215ENST00000462389ENSG00000273561ENST00000585000CIL_0005BD_0002ENSMUSG00000027602ENSMUST00000029128ENSMUST00000145086ENSMUST00000154596ENSMUSG00000038383ENSMUST00000077626ENSMUST00000139854ENSMUST00000165234ENSMUSG00000076216ENSMUST00000102261
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101460 ENST00000360668 N/A N/A N/A 3.794±0.00 0.813±0.00 N/A 0.801±0.00 1.255±0.00 N/A 1.004±0.00 0.620±0.00 8.465±7.13 N/A 20.002±0.00
ENST00000374837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397709 14.906±0.00 11.137±0.00 1.386±0.00 27.737±14.30 10.298±9.61 19.976±0.00 19.152±0.00 7.755±6.71 2.190±0.90 21.026±20.54 7.830±4.43 20.198±4.49 12.408±3.04 22.300±6.34
ENST00000476428 23.326±0.00 28.832±0.00 0.614±0.00 48.696±0.00 29.276±0.00 31.626±0.00 16.277±0.00 16.590±0.00 5.566±0.00 41.026±0.00 8.948±0.00 23.123±8.39 10.845±3.72 42.135±0.00
ENSG00000101464 ENST00000217446 3.499±0.00 0.856±0.00 0.617±0.00 2.871±0.43 3.470±1.53 3.144±2.13 2.849±2.27 7.453±0.00 2.568±1.61 1.985±1.46 2.783±2.13 9.571±4.88 16.653±7.39 7.981±2.66
ENST00000374820 N/A N/A 1.173±0.00 3.223±0.41 N/A 4.730±0.00 2.179±0.00 3.391±0.00 3.930±0.00 2.253±0.00 N/A 7.791±0.00 N/A 2.355±0.00
ENST00000438215 N/A N/A 2.836±0.00 N/A N/A N/A N/A N/A 1.665±0.00 2.908±0.00 N/A 15.579±0.00 10.645±0.00 7.488±0.00
ENST00000462389 N/A N/A 0.464±0.00 N/A N/A N/A N/A N/A N/A 0.635±0.00 N/A N/A N/A N/A
ENST00000480175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000273561 ENST00000585000 1.056±0.00 N/A N/A N/A N/A N/A 0.351±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027602 ENSMUST00000029128 99.695±23.05 756.340±110.21 42.595±0.81 49.796±28.43 111.793±56.51 114.721±12.82 211.717±74.69 88.400±9.06 21.858±15.21 116.957±32.88 29.855±7.27 148.859±52.52 12.206±6.61 350.583±8.83
ENSMUST00000145086 N/A N/A N/A 41.463±0.00 N/A N/A N/A N/A N/A N/A N/A 29.248±5.47 16.959±1.21 N/A
ENSMUST00000154596 86.118±37.08 229.216±30.13 27.579±6.54 22.030±10.07 42.287±11.00 N/A 168.795±10.46 N/A 3.343±1.06 47.573±6.29 116.424±6.64 69.902±13.84 19.976±9.14 74.340±29.40
ENSMUSG00000038383 ENSMUST00000077626 17.060±3.09 12.133±1.78 12.963±1.67 17.539±11.16 18.821±5.56 21.014±3.62 17.297±2.01 18.673±1.29 15.438±3.29 21.132±1.91 9.638±1.54 30.423±8.74 18.651±10.13 12.822±5.52
ENSMUST00000124419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139854 0.822±0.15 0.830±0.10 0.942±0.06 0.871±0.40 0.988±0.18 0.810±0.11 N/A N/A 0.548±0.00 1.061±0.05 0.435±0.07 1.404±0.44 N/A 0.081±0.00
ENSMUST00000165234 N/A 4.119±1.38 N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.390±0.39 N/A N/A
ENSMUSG00000076216 ENSMUST00000102261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1802.930±0.00

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