C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: microtubule-associated protein 1 light chain 3 alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027602 Map1lc3a 10090 + 2:155276297-155278073 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029128 Map1lc3a-001 155276297-155278073 protein_coding
  ENSMUST00000145086 Map1lc3a-002 155276543-155278070 processed_transcript
  ENSMUST00000154596 Map1lc3a-003 155276889-155278068 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029128ENSMUST00000145086ENSMUST00000154596
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029128 99.695±23.05 756.340±110.21 42.595±0.81 49.796±28.43 111.793±56.51 114.721±12.82 211.717±74.69 88.400±9.06 21.858±15.21 116.957±32.88 29.855±7.27 148.859±52.52 12.206±6.61 350.583±8.83
ENSMUST00000145086 N/A N/A N/A 41.463±0.00 N/A N/A N/A N/A N/A N/A N/A 29.248±5.47 16.959±1.21 N/A
ENSMUST00000154596 86.118±37.08 229.216±30.13 27.579±6.54 22.030±10.07 42.287±11.00 N/A 168.795±10.46 N/A 3.343±1.06 47.573±6.29 116.424±6.64 69.902±13.84 19.976±9.14 74.340±29.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0002 VISTA 2:154750090-155352094
CIL_0006S0 CIL_0006S0_0003 CGP 2:155236533-155278073
CIL_0005BD CIL_0005BD_0002 CGP 2:155276297-155357430

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 ISS autophagic vacuole assembly
GO:0000421 IDA autophagic vacuole membrane
GO:0000422 IEA mitochondrion degradation
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005737 ISS cytoplasm
GO:0005770 IEA late endosome
GO:0005776 ISS autophagic vacuole
GO:0005829 IEA cytosol
GO:0005874 IEA microtubule
GO:0006914 IEA autophagy
GO:0008429 IEA phosphatidylethanolamine binding
GO:0031090 ISS organelle membrane
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033609 map1lc3a microtubule-associated protein 1 light chain 3 alpha protein_coding Danio_rerio
ENSG00000101460 MAP1LC3A microtubule-associated protein 1 light chain 3 alpha protein_coding Homo_sapiens

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