C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule-associated protein 1 light chain 3 alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476428 MAP1LC3A-004 ENSG00000101460 9606 + 20:34558775-34560345 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000476428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000476428 23.326±0.00 28.832±0.00 0.614±0.00 48.696±0.00 29.276±0.00 31.626±0.00 16.277±0.00 16.590±0.00 5.566±0.00 41.026±0.00 8.948±0.00 23.123±8.39 10.845±3.72 42.135±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0001 VISTA 20:33968769-34569610
CIL_0006S0 CIL_0006S0_0002 CGP 20:34516409-34560345
CIL_0005BD CIL_0005BD_0001 CGP 20:34546854-34677090

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000145086 Map1lc3a-002 processed_transcript Mus_musculus 0 610
ENSMUST00000029128 Map1lc3a-001 protein_coding Mus_musculus 0 497
ENSMUST00000154596 Map1lc3a-003 processed_transcript Mus_musculus 0 490
ENSMUST00000181948 Map1lc3b-003 protein_coding Mus_musculus 0 228
ENSMUST00000180548 Map1lc3b-002 retained_intron Mus_musculus 0 228
ENSMUST00000181521 Map1lc3b-005 protein_coding Mus_musculus 0 226
ENSMUST00000034270 Map1lc3b-001 protein_coding Mus_musculus 0 226
ENSMUST00000180532 Gm6055-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000117640 Gm11949-001 processed_pseudogene Mus_musculus 2e-38 163

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