C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel, voltage-dependent, L type, alpha 1F subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102001 CACNA1F 9606 - X:49205063-49233371 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323022 CACNA1F-001 49205063-49233371 protein_coding
  ENST00000376251 CACNA1F-002 49205063-49233309 protein_coding
  ENST00000376265 CACNA1F-007 49205063-49233371 protein_coding
  ENST00000480889 CACNA1F-006 49222258-49223143 processed_transcript
  ENST00000481035 CACNA1F-004 49209661-49210999 retained_intron
  ENST00000486943 CACNA1F-005 49208816-49209712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323022ENST00000376251ENST00000480889ENST00000481035ENST00000486943
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323022 0.024±0.00 0.132±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000376251 N/A 0.173±0.00 0.095±0.04 0.030±0.00 0.009±0.00 0.010±0.00 0.015±0.00 0.007±0.00 0.074±0.00 0.041±0.00 0.043±0.01 0.019±0.01 0.023±0.00
ENST00000480889 N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A 0.070±0.00 N/A N/A
ENST00000481035 N/A N/A N/A 0.211±0.00 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00
ENST00000486943 0.179±0.00 0.404±0.00 0.238±0.00 N/A 0.156±0.00 0.080±0.00 0.084±0.00 N/A 0.136±0.00 N/A 0.080±0.00 N/A 0.175±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IEA photoreceptor outer segment
GO:0005216 IEA ion channel activity
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006811 IEA ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0007409 IEA axonogenesis
GO:0007601 IMP visual perception
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043025 IEA neuronal cell body
GO:0043204 IEA perikaryon
GO:0046872 IEA metal ion binding
GO:0048813 IEA dendrite morphogenesis
GO:0050908 IMP detection of light stimulus involved in visual perception
GO:0055085 IEA transmembrane transport
GO:0060041 IEA retina development in camera-type eye
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010933 CACNA1F (1 of 2) calcium channel, voltage-dependent, L type, alpha 1F subunit protein_coding Danio_rerio
ENSDARG00000023683 cacna1f calcium channel, voltage-dependent, alpha 1F subunit protein_coding Danio_rerio
ENSMUSG00000031142 Cacna1f calcium channel, voltage-dependent, alpha 1F subunit protein_coding Mus_musculus

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