C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, L type, alpha 1F subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376251 CACNA1F-002 ENSG00000102001 9606 - X:49205063-49233309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376251
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376251 0.173±0.00 0.095±0.04 0.030±0.00 0.009±0.00 0.010±0.00 0.015±0.00 0.007±0.00 0.074±0.00 0.041±0.00 0.043±0.01 0.019±0.01 0.023±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006811 IEA ion transport
GO:0007601 IMP visual perception
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0050908 IMP detection of light stimulus involved in visual perception
GO:0055085 IEA transmembrane transport
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115726 Cacna1f-001 protein_coding Mus_musculus 0 6706
ENSMUST00000115725 Cacna1f-002 protein_coding Mus_musculus 0 6597
ENSMUST00000155090 Cacna1f-003 nonsense_mediated_decay Mus_musculus 0 5483
ENSMUST00000141634 Cacna1f-004 retained_intron Mus_musculus 0 3941
ENSMUST00000133637 Cacna1f-005 protein_coding Mus_musculus 0 2547
ENSMUST00000187386 Cacna1c-006 protein_coding Mus_musculus 0 1328
ENSMUST00000188522 Cacna1c-014 protein_coding Mus_musculus 0 1328
ENSMUST00000187940 Cacna1c-002 protein_coding Mus_musculus 0 1328
ENSMUST00000144522 Cacna1f-006 retained_intron Mus_musculus 0 1312
ENSMUST00000188865 Cacna1c-020 protein_coding Mus_musculus 0 1301
ENSMUST00000112790 Cacna1c-005 protein_coding Mus_musculus 0 1301
ENSMUST00000190285 Cacna1c-007 protein_coding Mus_musculus 0 1273
ENSMUST00000187474 Cacna1c-008 protein_coding Mus_musculus 0 1273
ENSMUST00000188106 Cacna1c-011 protein_coding Mus_musculus 0 1269
ENSMUST00000185345 Cacna1c-019 protein_coding Mus_musculus 0 1253
ENSMUST00000188078 Cacna1c-015 protein_coding Mus_musculus 0 1245
ENSMUST00000075591 Cacna1c-024 protein_coding Mus_musculus 0 1245
ENSMUST00000078320 Cacna1c-004 protein_coding Mus_musculus 0 1245
ENSMUST00000186889 Cacna1c-001 protein_coding Mus_musculus 0 1245
ENSMUST00000112825 Cacna1c-201 protein_coding Mus_musculus 0 1194
ENSMUST00000188181 Cacna1c-012 processed_transcript Mus_musculus 0 1194
ENSDART00000089956 cacna1da-201 protein_coding Danio_rerio 0 1099
ENSDART00000058276 cacna1da-001 protein_coding Danio_rerio 0 1099
ENSDART00000100118 cacna1da-202 protein_coding Danio_rerio 0 1092
ENSMUST00000156047 Cacna1f-008 protein_coding Mus_musculus 0 1044
ENSMUST00000128628 Cacna1f-009 protein_coding Mus_musculus 0 963
ENSMUST00000112793 Cacna1c-010 protein_coding Mus_musculus 0 739
ENSMUST00000189389 Cacna1c-016 protein_coding Mus_musculus 0 734
ENSMUST00000189520 Cacna1c-017 protein_coding Mus_musculus 0 706
ENSMUST00000187317 Cacna1c-018 protein_coding Mus_musculus 0 658
ENSDART00000028856 cacna1c-201 protein_coding Danio_rerio 0 529
ENSDART00000132909 cacna1c-001 protein_coding Danio_rerio 0 484
ENSMUST00000157000 Cacna1f-010 retained_intron Mus_musculus 0 462
ENSMUST00000123979 Cacna1f-007 retained_intron Mus_musculus 0 287
ENSMUST00000100348 Cacna1b-201 protein_coding Mus_musculus 8e-36 158
ENSMUST00000114447 Cacna1b-003 protein_coding Mus_musculus 8e-36 158
ENSMUST00000041342 Cacna1b-002 protein_coding Mus_musculus 8e-36 158
ENSMUST00000102939 Cacna1b-004 protein_coding Mus_musculus 8e-36 158
ENSMUST00000070864 Cacna1b-001 protein_coding Mus_musculus 8e-36 158
ENSMUST00000151208 Cacna1f-011 retained_intron Mus_musculus 4e-19 102

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