C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel, voltage-dependent, alpha 1F subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031142 Cacna1f 10090 + X:7607083-7635196 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000115725 Cacna1f-002 7607129-7635196 protein_coding
  ENSMUST00000115726 Cacna1f-001 7607099-7635196 protein_coding
  ENSMUST00000123979 Cacna1f-007 7626230-7627941 retained_intron
  ENSMUST00000128628 Cacna1f-009 7627194-7630246 protein_coding
  ENSMUST00000133637 Cacna1f-005 7607120-7619133 protein_coding
  ENSMUST00000141634 Cacna1f-004 7607144-7635194 retained_intron
  ENSMUST00000144522 Cacna1f-006 7607098-7618109 retained_intron
  ENSMUST00000151208 Cacna1f-011 7631276-7632989 retained_intron
  ENSMUST00000155090 Cacna1f-003 7607083-7635193 nonsense_mediated_decay
  ENSMUST00000156047 Cacna1f-008 7627194-7630499 protein_coding
  ENSMUST00000157000 Cacna1f-010 7628189-7629762 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000115725ENSMUST00000115726ENSMUST00000123979ENSMUST00000128628ENSMUST00000133637ENSMUST00000141634ENSMUST00000144522ENSMUST00000151208ENSMUST00000155090ENSMUST00000157000
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000115725 0.008±0.00 0.010±0.01 N/A 0.027±0.00 0.011±0.00 0.001±0.00 0.005±0.00 0.007±0.01 0.018±0.01 0.017±0.00 0.020±0.01 0.011±0.01 0.004±0.00
ENSMUST00000115726 N/A 0.002±0.00 N/A N/A N/A N/A 0.002±0.00 0.001±0.00 N/A N/A 0.003±0.00 0.002±0.00 N/A
ENSMUST00000123979 N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A 0.065±0.00 N/A N/A
ENSMUST00000128628 N/A 0.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 0.034±0.00 N/A
ENSMUST00000133637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A
ENSMUST00000141634 0.028±0.00 0.018±0.00 0.009±0.00 0.028±0.01 0.054±0.00 N/A N/A 0.010±0.00 N/A N/A N/A 0.006±0.00 0.019±0.01
ENSMUST00000144522 N/A N/A 0.002±0.00 0.022±0.00 N/A N/A N/A N/A N/A N/A 0.022±0.01 0.014±0.00 0.004±0.00
ENSMUST00000151208 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 0.281±0.00 N/A 0.056±0.01
ENSMUST00000155090 0.012±0.01 0.015±0.02 N/A N/A 0.074±0.00 0.007±0.00 0.004±0.00 0.005±0.01 0.011±0.01 N/A 0.025±0.02 0.002±0.00 0.027±0.00
ENSMUST00000157000 N/A N/A N/A 0.196±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V1 CIL_0003V1_0002 CGP X:7607083-7653256

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IEA photoreceptor outer segment
GO:0005245 IMP voltage-gated calcium channel activity
GO:0005886 IBA plasma membrane
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006874 IMP cellular calcium ion homeostasis
GO:0007409 IMP axonogenesis
GO:0007601 IMP visual perception
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0016021 IEA integral component of membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043025 IEA neuronal cell body
GO:0043204 IEA perikaryon
GO:0048813 IMP dendrite morphogenesis
GO:0050908 IEA detection of light stimulus involved in visual perception
GO:0060041 IMP retina development in camera-type eye
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010933 CACNA1F (1 of 2) calcium channel, voltage-dependent, L type, alpha 1F subunit protein_coding Danio_rerio
ENSDARG00000023683 cacna1f calcium channel, voltage-dependent, alpha 1F subunit protein_coding Danio_rerio
ENSG00000102001 CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit protein_coding Homo_sapiens

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