C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 11 X-linked
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102290 PCDH11X 9606 + X:91779261-92623230 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298274 PCDH11X-005 91779261-91884007 processed_transcript
  ENST00000361655 PCDH11X-007 91835505-92619076 protein_coding
  ENST00000361724 PCDH11X-004 91834660-91879998 retained_intron
  ENST00000373088 PCDH11X-003 91835505-92619076 protein_coding
  ENST00000373094 PCDH11X-001 91834660-92623230 protein_coding
  ENST00000373097 PCDH11X-002 91834660-92623227 protein_coding
  ENST00000395337 PCDH11X-201 91779305-91880061 protein_coding
  ENST00000406881 PCDH11X-008 91835505-92619076 protein_coding
  ENST00000504220 PCDH11X-006 91835505-92619076 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298274ENST00000361655ENST00000361724ENST00000373088ENST00000373094ENST00000373097ENST00000395337ENST00000406881ENST00000504220
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298274 0.035±0.00 0.038±0.00 0.020±0.00 0.387±0.00 0.038±0.01 0.023±0.00 0.010±0.01 0.008±0.00 0.088±0.07 0.163±0.15 0.008±0.00 0.117±0.13 0.061±0.02 0.027±0.00
ENST00000361655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.489±0.00 0.120±0.00 N/A
ENST00000361724 N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A 0.009±0.00
ENST00000373088 N/A N/A N/A 1.559±0.00 N/A N/A 0.003±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000373094 N/A N/A N/A N/A N/A N/A N/A 0.002±0.00 N/A N/A N/A 0.036±0.00 N/A 0.006±0.00
ENST00000373097 N/A N/A N/A N/A 0.016±0.00 N/A N/A 0.002±0.00 N/A N/A N/A N/A N/A N/A
ENST00000395337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 0.247±0.00 N/A N/A
ENST00000406881 N/A N/A N/A 0.414±0.00 N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 0.158±0.00 N/A
ENST00000504220 N/A N/A N/A N/A N/A 0.041±0.00 0.003±0.00 N/A 0.267±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B8 CIL_0007B8_0001 CGP X:91434595-92623230

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0010923 IDA negative regulation of phosphatase activity
GO:0016020 IEA membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033556 PCDH11Y protocadherin 11 Y-linked protein_coding Danio_rerio
ENSMUSG00000034755 Pcdh11x protocadherin 11 X-linked protein_coding Mus_musculus

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