C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif (RNP1, RRM) protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102317 RBM3 9606 + X:48574449-48579066 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354480 RBM3-004 48575899-48578291 protein_coding
  ENST00000376755 RBM3-005 48574952-48577868 protein_coding
  ENST00000376759 RBM3-003 48574524-48579066 protein_coding
  ENST00000466764 RBM3-009 48574491-48577977 processed_transcript
  ENST00000472897 RBM3-002 48574449-48576591 processed_transcript
  ENST00000485213 RBM3-007 48574536-48576353 processed_transcript
  ENST00000488216 RBM3-008 48574484-48576419 processed_transcript
  ENST00000489344 RBM3-001 48574524-48577735 processed_transcript
  ENST00000490127 RBM3-011 48574511-48576520 processed_transcript
  ENST00000491236 RBM3-010 48574990-48575995 processed_transcript
  ENST00000491240 RBM3-006 48574524-48576068 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354480ENST00000376755ENST00000376759ENST00000466764ENST00000488216ENST00000489344
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354480 N/A 1.998±0.00 5.321±0.00 15.054±0.00 7.478±0.00 2.470±0.00 N/A 9.261±0.00 6.129±0.00 5.323±0.00 14.526±6.59 23.979±0.00 14.320±0.00
ENST00000376755 N/A 3.175±0.00 5.563±0.00 21.292±0.00 25.674±0.00 3.854±0.00 4.269±0.00 9.280±0.00 11.740±0.00 N/A 53.301±47.34 164.878±0.00 32.721±0.00
ENST00000376759 61.523±0.00 N/A 5.936±3.89 15.541±0.00 2.944±0.00 1.482±0.00 7.311±2.70 4.572±0.39 9.140±0.00 1.514±0.00 15.666±10.48 10.144±0.00 7.824±0.00
ENST00000466764 77.526±0.00 N/A N/A 7.112±0.00 7.428±3.24 N/A N/A N/A 14.934±0.00 3.707±0.00 13.152±7.35 N/A N/A
ENST00000488216 N/A N/A N/A N/A N/A N/A 5.233±0.00 N/A N/A N/A N/A N/A N/A
ENST00000489344 156.478±0.00 3.520±0.00 22.524±11.28 43.689±26.69 8.967±0.00 N/A 7.456±0.00 N/A N/A 7.839±0.00 48.382±25.26 115.320±0.00 23.122±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006396 TAS RNA processing
GO:0006412 IEA translation
GO:0006417 ISS regulation of translation
GO:0009409 IEA response to cold
GO:0015934 ISS large ribosomal subunit
GO:0030425 ISS dendrite
GO:0035196 IEA production of miRNAs involved in gene silencing by miRNA
GO:0043023 IEA ribosomal large subunit binding
GO:0044822 IDA poly(A) RNA binding
GO:0045727 ISS positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013351 cirbp cold inducible RNA binding protein protein_coding Danio_rerio
ENSDARG00000042049 protein_coding Danio_rerio
ENSMUSG00000031167 Rbm3 RNA binding motif protein 3 protein_coding Mus_musculus

Loading