C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031167 Rbm3 10090 - X:8138975-8145880 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040010 Rbm3-005 8138978-8145697 protein_coding
  ENSMUST00000115615 Rbm3-002 8142361-8145723 protein_coding
  ENSMUST00000115616 Rbm3-004 8142368-8145773 protein_coding
  ENSMUST00000115617 Rbm3-003 8142368-8145696 protein_coding
  ENSMUST00000115619 Rbm3-011 8140784-8145679 protein_coding
  ENSMUST00000115621 Rbm3-001 8142359-8145880 protein_coding
  ENSMUST00000129947 Rbm3-007 8142472-8145696 nonsense_mediated_decay
  ENSMUST00000141629 Rbm3-006 8143028-8145697 nonsense_mediated_decay
  ENSMUST00000141925 Rbm3-009 8142890-8145722 retained_intron
  ENSMUST00000145450 Rbm3-008 8144474-8145759 retained_intron
  ENSMUST00000155599 Rbm3-010 8138975-8142918 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040010ENSMUST00000115615ENSMUST00000115616ENSMUST00000115617ENSMUST00000115619ENSMUST00000115621ENSMUST00000129947ENSMUST00000141629ENSMUST00000141925
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040010 N/A N/A 8.960±0.00 12.259±0.00 4.523±0.00 4.456±0.00 1.130±0.12 2.273±0.40 10.328±6.91 N/A N/A 7.191±0.97 4.626±2.76 N/A
ENSMUST00000115615 15.204±4.48 N/A 24.145±3.26 33.386±1.28 N/A 12.373±0.00 N/A 6.773±1.33 43.242±9.07 13.794±1.05 9.694±1.89 22.222±3.75 29.202±14.94 2.659±0.42
ENSMUST00000115616 21.523±3.93 N/A 46.776±5.94 43.261±4.93 13.949±2.51 14.616±0.00 6.470±1.79 9.152±0.96 38.812±23.08 13.350±2.00 16.782±3.35 33.096±13.26 33.618±19.62 4.203±0.96
ENSMUST00000115617 15.876±0.00 N/A N/A 15.597±0.00 19.928±5.61 14.604±4.44 6.131±0.33 8.855±0.00 23.508±15.21 16.447±2.49 6.702±0.98 27.346±6.59 19.834±9.83 2.853±1.01
ENSMUST00000115619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 55.942±5.36 20.429±10.87 15.251±0.00
ENSMUST00000115621 N/A N/A 16.156±0.00 N/A N/A N/A N/A N/A 31.486±10.20 N/A 13.592±1.66 N/A 32.242±13.68 N/A
ENSMUST00000129947 N/A N/A N/A N/A N/A N/A N/A N/A 1.381±0.00 N/A N/A N/A N/A N/A
ENSMUST00000141629 N/A N/A N/A N/A N/A 5.758±0.00 4.143±0.31 5.380±1.30 3.651±1.75 9.258±0.00 N/A 11.794±0.87 N/A N/A
ENSMUST00000141925 18.110±6.63 19.405±3.12 36.135±8.23 41.851±17.16 20.161±2.29 16.262±3.32 7.725±0.92 8.747±1.13 17.148±12.43 17.713±1.16 11.996±1.27 31.605±5.50 16.855±4.96 3.011±1.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006412 IDA translation
GO:0006417 IDA regulation of translation
GO:0009409 IDA response to cold
GO:0015934 ISS large ribosomal subunit
GO:0030425 ISS dendrite
GO:0035196 IDA production of miRNAs involved in gene silencing by miRNA
GO:0043023 IPI ribosomal large subunit binding
GO:0044822 IEA poly(A) RNA binding
GO:0045727 ISS positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013351 cirbp cold inducible RNA binding protein protein_coding Danio_rerio
ENSDARG00000042049 protein_coding Danio_rerio
ENSG00000102317 RBM3 RNA binding motif (RNP1, RRM) protein 3 protein_coding Homo_sapiens

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