C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif (RNP1, RRM) protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376759 RBM3-003 ENSG00000102317 9606 + X:48574524-48579066 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376759
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376759 61.523±0.00 5.936±3.89 15.541±0.00 2.944±0.00 1.482±0.00 7.311±2.70 4.572±0.39 9.140±0.00 1.514±0.00 15.666±10.48 10.144±0.00 7.824±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006396 TAS RNA processing
GO:0006412 IEA translation
GO:0006417 ISS regulation of translation
GO:0009409 IEA response to cold
GO:0015934 ISS large ribosomal subunit
GO:0030425 ISS dendrite
GO:0035196 IEA production of miRNAs involved in gene silencing by miRNA
GO:0043023 IEA ribosomal large subunit binding
GO:0044822 IDA poly(A) RNA binding
GO:0045727 ISS positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115617 Rbm3-003 protein_coding Mus_musculus 0 741
ENSMUST00000115616 Rbm3-004 protein_coding Mus_musculus 0 737
ENSMUST00000115615 Rbm3-002 protein_coding Mus_musculus 0 726
ENSMUST00000115621 Rbm3-001 protein_coding Mus_musculus 0 723
ENSMUST00000040010 Rbm3-005 protein_coding Mus_musculus 0 579
ENSMUST00000115619 Rbm3-011 protein_coding Mus_musculus 0 566
ENSMUST00000121422 AC121113.2-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000122364 Gm10156-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000120263 Gm13624-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000129947 Rbm3-007 nonsense_mediated_decay Mus_musculus 0 455
ENSMUST00000141925 Rbm3-009 retained_intron Mus_musculus 0 359
ENSMUST00000141629 Rbm3-006 nonsense_mediated_decay Mus_musculus 0 292

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