C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family C (CFTR/MRP), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103222 ABCC1 9606 + 16:15949577-16143074 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000399408 ABCC1-201 15949577-16143074 protein_coding
  ENST00000399410 ABCC1-001 15949577-16143062 protein_coding
  ENST00000572053 ABCC1-005 16102683-16115069 nonsense_mediated_decay
  ENST00000572882 ABCC1-007 16009856-16141525 protein_coding
  ENST00000574224 ABCC1-002 16014540-16056561 retained_intron
  ENST00000574761 ABCC1-006 16106526-16122103 retained_intron
  ENST00000575422 ABCC1-003 16076174-16111461 retained_intron
  ENST00000576557 ABCC1-004 16097992-16106868 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399408ENST00000399410ENST00000572882ENST00000574224ENST00000574761
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399408 N/A N/A 0.355±0.00 N/A N/A N/A 0.229±0.00 N/A N/A N/A N/A 1.543±0.00 N/A N/A
ENST00000399410 4.762±0.00 5.617±0.00 N/A 0.643±0.00 4.068±3.32 3.889±0.00 2.698±2.29 2.805±0.00 1.120±0.83 5.191±4.12 3.984±0.00 5.276±2.65 5.079±0.53 10.517±0.36
ENST00000572882 1.586±0.00 N/A 0.526±0.00 0.483±0.21 1.264±0.00 N/A 0.496±0.00 N/A 1.112±0.00 1.060±0.00 3.033±0.18 1.280±0.00 1.685±0.00 N/A
ENST00000574224 N/A N/A N/A 1.040±0.00 N/A N/A N/A 1.267±0.00 N/A 2.713±0.00 N/A N/A N/A N/A
ENST00000574761 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.095±0.00 N/A 6.710±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MS CIL_0006MS_0001 CGP 16:15865720-16143074

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005524 IEA ATP binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006691 TAS leukotriene metabolic process
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006810 IEA transport
GO:0009235 TAS cobalamin metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0019369 TAS arachidonic acid metabolic process
GO:0042493 TAS response to drug
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0044281 TAS small molecule metabolic process
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059874 ABCC1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein_coding Danio_rerio
ENSMUSG00000023088 Abcc1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein_coding Mus_musculus

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