C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006MS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133393-ENSG00000103222 CGP 9606 16:15865720-16143074
GeneTranscriptPositionBiotype
ENSG00000103222 (ABCC1)
ATP-binding cassette, sub-family C (CFTR/MRP), member 1 		ENST00000399408 (ABCC1-201) 15949577-16143074 protein_coding
ENST00000399410 (ABCC1-001) 15949577-16143062 protein_coding
ENST00000572053 (ABCC1-005) 16102683-16115069 nonsense_mediated_decay
ENST00000572882 (ABCC1-007) 16009856-16141525 protein_coding
ENST00000574224 (ABCC1-002) 16014540-16056561 retained_intron
ENST00000574761 (ABCC1-006) 16106526-16122103 retained_intron
ENST00000575422 (ABCC1-003) 16076174-16111461 retained_intron
ENST00000576557 (ABCC1-004) 16097992-16106868 processed_transcript
ENSG00000133393 (FOPNL)
FGFR1OP N-terminal like 		ENST00000255759 (FOPNL-001) 15865720-15888615 protein_coding
ENST00000572415 (FOPNL-004) 15867307-15888623 nonsense_mediated_decay
ENST00000573087 (FOPNL-003) 15867069-15888625 nonsense_mediated_decay
ENST00000573396 (FOPNL-008) 15867179-15888599 protein_coding
ENST00000573429 (FOPNL-005) 15867420-15888614 protein_coding
ENST00000573968 (FOPNL-002) 15865721-15888602 protein_coding
ENST00000575073 (FOPNL-007) 15867338-15888625 protein_coding
ENST00000575744 (FOPNL-006) 15867220-15888603 protein_coding
ENST00000575938 (FOPNL-009) 15873485-15888593 protein_coding
ENSG00000206778 (RNU6-213P)
RNA, U6 small nuclear 213, pseudogene 		ENST00000384051 (RNU6-213P-201) 15877163-15877266 snRNA
ENSG00000215003 (RPL15P20)
ribosomal protein L15 pseudogene 20 		ENST00000482912 (RPL15P20-001) 15931697-15932294 processed_pseudogene
ENSG00000241067 (RPL17P40)
ribosomal protein L17 pseudogene 40 		ENST00000400791 (RPL17P40-001) 16094192-16095209 processed_pseudogene
ENSG00000262171 (CTA-972D3.2)
 ENST00000573856 (CTA-972D3.2-001) 15885029-15886158 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006MS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022677-ENSMUSG00000023088 CGP 10090 16:14299244-14475737
GeneTranscriptPositionBiotype
ENSMUSG00000022677 (Fopnl)
Fgfr1op N-terminal like 		ENSMUST00000023357 (Fopnl-001) 14299244-14317375 protein_coding
ENSMUST00000120707 (Fopnl-002) 14299244-14317347 protein_coding
ENSMUST00000148278 (Fopnl-003) 14299442-14317332 processed_transcript
ENSMUSG00000023088 (Abcc1)
ATP-binding cassette, sub-family C (CFTR/MRP), member 1 		ENSMUST00000100167 (Abcc1-001) 14361560-14475737 protein_coding
ENSMUST00000130671 (Abcc1-010) 14361558-14473902 nonsense_mediated_decay
ENSMUST00000133454 (Abcc1-003) 14361558-14473902 nonsense_mediated_decay
ENSMUST00000134776 (Abcc1-011) 14361581-14405061 protein_coding
ENSMUST00000134960 (Abcc1-006) 14461008-14468236 retained_intron
ENSMUST00000144074 (Abcc1-009) 14393953-14394327 processed_transcript
ENSMUST00000144676 (Abcc1-007) 14365762-14391443 protein_coding
ENSMUST00000146032 (Abcc1-005) 14461013-14474042 retained_intron
ENSMUST00000147759 (Abcc1-004) 14361558-14473902 nonsense_mediated_decay
ENSMUST00000154748 (Abcc1-008) 14361576-14396405 protein_coding
ENSMUST00000156089 (Abcc1-002) 14402360-14420743 retained_intron
ENSMUSG00000087557 (Gm15869)
predicted gene 15869 		ENSMUST00000126427 (Gm15869-001) 14316074-14317285 sense_intronic

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006MS_0001ENSG00000103222ENST00000399408ENST00000399410ENST00000572053ENST00000572882ENST00000574224ENST00000574761ENST00000575422ENST00000576557ENSG00000133393ENST00000255759ENST00000572415ENST00000573087ENST00000573396ENST00000573429ENST00000573968ENST00000575073ENST00000575744ENST00000575938ENSG00000206778ENST00000384051ENSG00000215003ENST00000482912ENSG00000241067ENST00000400791ENSG00000262171ENST00000573856CIL_0006MS_0002ENSMUSG00000022677ENSMUST00000023357ENSMUST00000120707ENSMUST00000148278ENSMUSG00000023088ENSMUST00000100167ENSMUST00000130671ENSMUST00000133454ENSMUST00000134776ENSMUST00000134960ENSMUST00000144074ENSMUST00000144676ENSMUST00000146032ENSMUST00000147759ENSMUST00000154748ENSMUST00000156089ENSMUSG00000087557ENSMUST00000126427
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006MS_0001ENSG00000103222ENST00000399408ENST00000399410ENST00000572882ENST00000574224ENST00000574761ENSG00000133393ENST00000255759ENST00000573968ENST00000575938ENSG00000206778ENST00000384051ENSG00000215003ENST00000482912ENSG00000241067ENST00000400791ENSG00000262171ENST00000573856CIL_0006MS_0002ENSMUSG00000022677ENSMUST00000023357ENSMUST00000120707ENSMUST00000148278ENSMUSG00000023088ENSMUST00000100167ENSMUST00000130671ENSMUST00000133454ENSMUST00000134776ENSMUST00000146032ENSMUST00000147759ENSMUST00000154748ENSMUSG00000087557ENSMUST00000126427
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000103222 ENST00000399408 N/A N/A 0.355±0.00 N/A N/A N/A 0.229±0.00 N/A N/A N/A N/A 1.543±0.00 N/A N/A
ENST00000399410 4.762±0.00 5.617±0.00 N/A 0.643±0.00 4.068±3.32 3.889±0.00 2.698±2.29 2.805±0.00 1.120±0.83 5.191±4.12 3.984±0.00 5.276±2.65 5.079±0.53 10.517±0.36
ENST00000572053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572882 1.586±0.00 N/A 0.526±0.00 0.483±0.21 1.264±0.00 N/A 0.496±0.00 N/A 1.112±0.00 1.060±0.00 3.033±0.18 1.280±0.00 1.685±0.00 N/A
ENST00000574224 N/A N/A N/A 1.040±0.00 N/A N/A N/A 1.267±0.00 N/A 2.713±0.00 N/A N/A N/A N/A
ENST00000574761 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.095±0.00 N/A 6.710±0.00 N/A N/A
ENST00000575422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000133393 ENST00000255759 3.242±0.00 5.934±0.00 N/A 5.084±0.00 8.740±0.00 2.733±1.67 4.146±3.14 9.829±0.00 2.251±0.33 3.262±0.00 6.383±0.00 5.156±1.81 4.877±1.98 10.706±3.71
ENST00000572415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573968 N/A N/A N/A N/A 1.548±0.00 N/A 2.449±0.00 3.810±0.00 N/A N/A N/A N/A N/A N/A
ENST00000575073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.907±0.00
ENSG00000206778 ENST00000384051 N/A 0.258±0.00 N/A 0.277±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215003 ENST00000482912 0.085±0.00 0.090±0.00 N/A 0.195±0.00 0.031±0.00 0.056±0.00 N/A 0.061±0.00 0.026±0.00 0.028±0.00 0.229±0.00 N/A N/A N/A
ENSG00000241067 ENST00000400791 N/A N/A N/A N/A N/A N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A
ENSG00000262171 ENST00000573856 N/A 0.146±0.00 N/A 0.084±0.00 0.780±0.00 0.139±0.06 0.141±0.01 0.061±0.00 N/A 0.169±0.00 N/A 0.055±0.00 N/A 0.246±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022677 ENSMUST00000023357 19.441±0.97 18.759±4.21 22.974±0.00 7.789±4.90 16.366±4.28 21.506±5.27 12.846±4.34 11.267±2.55 11.229±6.47 13.941±1.04 13.334±2.03 19.011±13.28 7.900±3.50 6.070±3.31
ENSMUST00000120707 N/A 9.307±4.29 N/A N/A 3.521±0.00 N/A N/A N/A N/A N/A N/A 13.394±7.06 2.406±0.00 2.160±0.00
ENSMUST00000148278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.787±1.50 8.206±0.20 N/A
ENSMUSG00000023088 ENSMUST00000100167 5.102±1.23 4.248±0.70 3.754±1.19 1.771±0.90 11.240±2.00 7.059±2.81 1.272±0.35 2.956±2.28 1.375±0.68 6.743±1.75 1.861±0.84 10.190±3.54 3.628±3.47 2.269±1.30
ENSMUST00000130671 N/A 1.444±0.00 N/A N/A 4.299±0.35 N/A N/A 1.045±0.00 0.208±0.00 N/A N/A 2.628±0.26 N/A 0.856±0.00
ENSMUST00000133454 N/A N/A N/A N/A 9.945±0.00 N/A N/A N/A 0.090±0.03 N/A N/A 1.369±0.00 2.752±0.16 N/A
ENSMUST00000134776 N/A 12.228±0.74 N/A N/A N/A N/A 12.827±0.44 10.548±2.47 0.759±0.00 N/A N/A N/A N/A N/A
ENSMUST00000134960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146032 N/A 4.713±0.00 N/A 1.927±0.00 N/A N/A N/A N/A N/A N/A N/A 3.856±0.00 4.152±1.35 1.874±0.00
ENSMUST00000147759 N/A N/A N/A 1.653±0.00 N/A N/A N/A N/A N/A N/A N/A 2.443±0.00 N/A 0.798±0.00
ENSMUST00000154748 N/A 14.554±0.00 N/A N/A N/A 22.608±0.00 N/A N/A 0.796±0.00 N/A N/A N/A N/A N/A
ENSMUST00000156089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087557 ENSMUST00000126427 0.318±0.13 0.346±0.27 0.145±0.00 0.189±0.04 0.332±0.18 0.426±0.19 0.175±0.10 0.218±0.09 0.119±0.06 0.164±0.06 0.166±0.11 0.335±0.16 0.149±0.06 5.153±2.35

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