C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family C (CFTR/MRP), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399408 ABCC1-201 ENSG00000103222 9606 + 16:15949577-16143074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartOvaryENST00000399408
Transcript ID Bladder Heart Ovary
ENST00000399408 0.355±0.00 0.229±0.00 1.543±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MS CIL_0006MS_0001 CGP 16:15865720-16143074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005524 IEA ATP binding
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130671 Abcc1-010 nonsense_mediated_decay Mus_musculus 0 2507
ENSMUST00000147759 Abcc1-004 nonsense_mediated_decay Mus_musculus 0 2507
ENSMUST00000100167 Abcc1-001 protein_coding Mus_musculus 0 2503
ENSMUST00000133454 Abcc1-003 nonsense_mediated_decay Mus_musculus 0 1888
ENSMUST00000156089 Abcc1-002 retained_intron Mus_musculus 0 782
ENSMUST00000134960 Abcc1-006 retained_intron Mus_musculus 0 706
ENSMUST00000146032 Abcc1-005 retained_intron Mus_musculus 0 604
ENSMUST00000134776 Abcc1-011 protein_coding Mus_musculus 0 555
ENSDART00000151232 ABCC1-001 protein_coding Danio_rerio 0 538
ENSMUST00000144676 Abcc1-007 protein_coding Mus_musculus 0 385
ENSMUST00000154748 Abcc1-008 protein_coding Mus_musculus 0 289
ENSDART00000131340 protein_coding Danio_rerio 0 265
ENSDART00000042812 protein_coding Danio_rerio 0 259

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