C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 40, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000563683 RNF40-011 ENSG00000103549 9606 + 16:30762322-30775181 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000563683
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000563683 19.580±0.00 13.595±0.00 4.277±0.00 12.544±8.44 7.916±4.10 5.920±1.48 6.651±3.69 4.613±0.00 7.196±3.16 18.953±11.00 16.286±3.32 30.763±5.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VK CIL_0003VK_0002 CGP 16:30748270-30762710
CIL_00044V CIL_00044V_0002 CGP 16:30757423-30776307
CIL_0000TY CIL_0000TY_0001 CGP 16:30761745-30787202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033088 Rnf40-201 protein_coding Mus_musculus 0 2331

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