C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3a, subunit 2, 66kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000221494 SF3A2-001 ENSG00000104897 9606 + 19:2236504-2248679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221494
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221494 28.838±0.00 39.469±0.00 6.305±4.56 17.157±10.26 17.578±12.99 4.502±4.02 19.569±0.00 4.688±3.17 12.907±10.91 22.380±0.00 66.466±26.79 54.154±3.88 93.310±4.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T8 CIL_0001T8_0001 CGP 19:2164149-2237704
CIL_0001II CIL_0001II_0001 CGP 19:2230084-2248679
CIL_0001IF CIL_0001IF_0001 CGP 19:2236504-2252073

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000389 TAS mRNA 3'-splice site recognition
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0006397 IMP mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148665 Sf3a2-001 protein_coding Mus_musculus 0 1188
ENSMUST00000151928 Sf3a2-004 protein_coding Mus_musculus 0 697
ENSMUST00000139461 Sf3a2-003 retained_intron Mus_musculus 0 444

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