C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, S
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105426 PTPRS 9606 - 19:5158495-5340803 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262963 PTPRS-201 5206537-5286163 protein_coding
  ENST00000348075 PTPRS-202 5205508-5340803 protein_coding
  ENST00000353284 PTPRS-203 5205508-5340803 protein_coding
  ENST00000357368 PTPRS-204 5205508-5340803 protein_coding
  ENST00000586065 PTPRS-007 5274199-5292787 protein_coding
  ENST00000587303 PTPRS-002 5206368-5286240 protein_coding
  ENST00000588012 PTPRS-003 5206537-5286163 protein_coding
  ENST00000588552 PTPRS-004 5158495-5340803 processed_transcript
  ENST00000589851 PTPRS-008 5215367-5220016 retained_intron
  ENST00000590509 PTPRS-005 5273061-5286388 protein_coding
  ENST00000591760 PTPRS-006 5273549-5293252 protein_coding
  ENST00000592099 PTPRS-001 5206537-5286163 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348075ENST00000353284ENST00000357368ENST00000588012ENST00000588552ENST00000592099
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348075 11.827±0.00 N/A N/A N/A N/A 3.412±0.00 2.540±1.97 1.965±0.47 2.098±0.41 6.645±5.85 1.604±0.00 4.059±2.66 0.655±0.15 N/A
ENST00000353284 4.861±0.00 5.833±0.00 N/A 11.835±5.97 N/A 8.091±0.00 N/A 5.199±0.00 0.944±0.00 6.396±0.00 0.740±0.00 6.039±4.96 1.676±1.35 7.624±0.00
ENST00000357368 N/A N/A N/A 6.937±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.099±0.00
ENST00000588012 N/A N/A N/A N/A N/A 1.149±0.00 N/A N/A N/A N/A N/A 9.461±0.00 0.307±0.00 N/A
ENST00000588552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.365±0.00 N/A N/A N/A
ENST00000592099 9.635±0.00 N/A 1.852±0.00 6.247±3.38 12.687±10.72 0.610±0.00 N/A 2.771±0.00 5.175±0.00 2.443±0.00 N/A 20.044±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ON CIL_0005ON_0001 CGP 19:4969113-5340803
CIL_0005OM CIL_0005OM_0001 CGP 19:5158495-5456856

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005001 TAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0006470 IEA protein dephosphorylation
GO:0007155 IEA cell adhesion
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0021510 IEA spinal cord development
GO:0021549 IEA cerebellum development
GO:0021766 IEA hippocampus development
GO:0021987 IEA cerebral cortex development
GO:0022038 IEA corpus callosum development
GO:0030198 TAS extracellular matrix organization
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038590 ptprsb protein tyrosine phosphatase, receptor type, s, b protein_coding Danio_rerio
ENSDARG00000059738 ptprsa protein tyrosine phosphatase, receptor type, s, a protein_coding Danio_rerio
ENSDARG00000073679 CABZ01092973.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000013236 Ptprs protein tyrosine phosphatase, receptor type, S protein_coding Mus_musculus

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