C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105991 HOXA1 9606 - 7:27092993-27095996 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343060 HOXA1-001 27092993-27095974 protein_coding
  ENST00000355633 HOXA1-002 27093313-27095996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000343060ENST00000355633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000343060 N/A N/A N/A N/A N/A N/A N/A 0.351±0.00 N/A 0.224±0.11 N/A N/A
ENST00000355633 0.224±0.00 0.902±0.00 0.060±0.00 0.016±0.00 0.390±0.25 0.441±0.06 0.081±0.00 0.092±0.00 0.107±0.00 0.922±0.48 0.121±0.04 0.240±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0003PD CIL_0003PD_0001 CGP 7:26667062-27095996
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PE CIL_0003PE_0001 CGP 7:27092993-27102811

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007275 TAS multicellular organismal development
GO:0007399 IEA nervous system development
GO:0007605 IDA sensory perception of sound
GO:0007634 IDA optokinetic behavior
GO:0008045 IEA motor neuron axon guidance
GO:0009653 IMP anatomical structure morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0021569 IEA rhombomere 3 development
GO:0021570 IEA rhombomere 4 development
GO:0021571 IEA rhombomere 5 development
GO:0021599 IMP abducens nerve formation
GO:0021612 IEA facial nerve structural organization
GO:0021754 IEA facial nucleus development
GO:0021953 IEA central nervous system neuron differentiation
GO:0030902 IEA hindbrain development
GO:0042472 IEA inner ear morphogenesis
GO:0042473 IDA outer ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IEA anatomical structure formation involved in morphogenesis
GO:0048702 IMP embryonic neurocranium morphogenesis
GO:0048839 IMP inner ear development
GO:0048844 IMP artery morphogenesis
GO:0050795 IDA regulation of behavior
GO:0050890 IDA cognition
GO:0050905 IDA neuromuscular process
GO:0060840 IMP artery development
GO:0060876 IMP semicircular canal formation
GO:0071300 IEA cellular response to retinoic acid
GO:0090102 IMP cochlea development
GO:0090103 IMP cochlea morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008174 hoxb1a homeo box B1a protein_coding Danio_rerio
ENSDARG00000054033 hoxb1b homeo box B1b protein_coding Danio_rerio
ENSDARG00000057721 hoxa1a homeo box A1a protein_coding Danio_rerio
ENSDARG00000070337 hoxc1a homeo box C1a protein_coding Danio_rerio
ENSMUSG00000029844 Hoxa1 homeobox A1 protein_coding Mus_musculus

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