C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355633 HOXA1-002 ENSG00000105991 9606 - 7:27093313-27095996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000355633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000355633 0.224±0.00 0.902±0.00 0.060±0.00 0.016±0.00 0.390±0.25 0.441±0.06 0.081±0.00 0.092±0.00 0.107±0.00 0.922±0.48 0.121±0.04 0.240±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0003PD CIL_0003PD_0001 CGP 7:26667062-27095996
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PE CIL_0003PE_0001 CGP 7:27092993-27102811

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120363 Hoxa1-002 protein_coding Mus_musculus 0 1751
ENSMUST00000000964 Hoxa1-001 protein_coding Mus_musculus 0 1190
ENSMUST00000173348 Nkx1-1-001 protein_coding Mus_musculus 0.00000006 64

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