C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343060 HOXA1-001 ENSG00000105991 9606 - 7:27092993-27095974 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverOvaryENST00000343060
Transcript ID Liver Ovary
ENST00000343060 0.351±0.00 0.224±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0003PD CIL_0003PD_0001 CGP 7:26667062-27095996
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PE CIL_0003PE_0001 CGP 7:27092993-27102811

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007275 TAS multicellular organismal development
GO:0007399 IEA nervous system development
GO:0007605 IDA sensory perception of sound
GO:0007634 IDA optokinetic behavior
GO:0008045 IEA motor neuron axon guidance
GO:0009653 IMP anatomical structure morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0021569 IEA rhombomere 3 development
GO:0021570 IEA rhombomere 4 development
GO:0021571 IEA rhombomere 5 development
GO:0021599 IMP abducens nerve formation
GO:0021612 IEA facial nerve structural organization
GO:0021754 IEA facial nucleus development
GO:0021953 IEA central nervous system neuron differentiation
GO:0030902 IEA hindbrain development
GO:0042472 IEA inner ear morphogenesis
GO:0042473 IDA outer ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IEA anatomical structure formation involved in morphogenesis
GO:0048702 IMP embryonic neurocranium morphogenesis
GO:0048839 IMP inner ear development
GO:0048844 IMP artery morphogenesis
GO:0050795 IDA regulation of behavior
GO:0050890 IDA cognition
GO:0050905 IDA neuromuscular process
GO:0060840 IMP artery development
GO:0060876 IMP semicircular canal formation
GO:0071300 IEA cellular response to retinoic acid
GO:0090102 IMP cochlea development
GO:0090103 IMP cochlea morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000964 Hoxa1-001 protein_coding Mus_musculus 0 2028
ENSMUST00000120363 Hoxa1-002 protein_coding Mus_musculus 0 1190
ENSMUST00000173348 Nkx1-1-001 protein_coding Mus_musculus 0.00000008 64

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