C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-stranded DNA binding protein 1, mitochondrial
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106028 SSBP1 9606 + 7:141738321-141787922 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265304 SSBP1-001 141738321-141750461 protein_coding
  ENST00000461433 SSBP1-004 141738401-141740714 retained_intron
  ENST00000463093 SSBP1-008 141738401-141745545 protein_coding
  ENST00000465167 SSBP1-013 141738406-141750332 processed_transcript
  ENST00000465582 SSBP1-014 141738400-141787922 protein_coding
  ENST00000467681 SSBP1-007 141738396-141750314 protein_coding
  ENST00000468267 SSBP1-009 141738409-141739756 retained_intron
  ENST00000469123 SSBP1-012 141738391-141750456 processed_transcript
  ENST00000473783 SSBP1-011 141738603-141742229 protein_coding
  ENST00000481508 SSBP1-006 141738607-141750461 protein_coding
  ENST00000484178 SSBP1-010 141738600-141750461 protein_coding
  ENST00000489378 SSBP1-003 141738365-141746526 retained_intron
  ENST00000496622 SSBP1-002 141738358-141741690 retained_intron
  ENST00000498107 SSBP1-005 141738358-141750354 protein_coding
  ENST00000612337 SSBP1-201 141738334-141750488 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265304ENST00000463093ENST00000465167ENST00000465582ENST00000469123ENST00000496622ENST00000498107ENST00000612337
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265304 41.966±0.00 62.331±0.00 N/A 20.279±4.83 39.064±16.09 34.599±13.18 25.247±11.51 29.930±14.02 22.867±12.73 15.526±3.21 12.802±7.23 59.328±25.65 52.173±13.39 54.919±22.62
ENST00000463093 16.308±0.00 N/A N/A 13.920±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465167 N/A N/A 16.013±0.00 N/A N/A 18.740±0.00 N/A N/A 14.516±0.00 N/A N/A N/A N/A N/A
ENST00000465582 N/A N/A N/A 13.060±0.00 7.786±0.00 N/A 6.428±0.00 5.669±0.00 11.896±0.00 N/A 4.873±0.00 N/A N/A N/A
ENST00000469123 N/A N/A 14.721±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496622 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.437±0.00 N/A N/A N/A N/A
ENST00000498107 N/A 28.574±0.00 N/A 11.258±7.13 N/A 17.354±0.00 12.979±0.00 27.039±0.00 N/A 10.893±0.00 6.379±4.00 25.772±1.78 14.138±2.33 18.280±5.50
ENST00000612337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.942±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A1 CIL_0003A1_0001 CGP 7:141708353-141787922
CIL_0003A0 CIL_0003A0_0001 CGP 7:141738321-141787922

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0006260 IEA DNA replication
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding
GO:0051096 IDA positive regulation of helicase activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070584 IEA mitochondrion morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039350 ssbp1 single-stranded DNA binding protein 1 protein_coding Danio_rerio
ENSMUSG00000029911 Ssbp1 single-stranded DNA binding protein 1 protein_coding Mus_musculus

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