C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003A0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106028-ENSG00000106028 CGP 9606 7:141738321-141787922
GeneTranscriptPositionBiotype
ENSG00000106028 (SSBP1)
single-stranded DNA binding protein 1, mitochondrial 		ENST00000265304 (SSBP1-001) 141738321-141750461 protein_coding
ENST00000461433 (SSBP1-004) 141738401-141740714 retained_intron
ENST00000463093 (SSBP1-008) 141738401-141745545 protein_coding
ENST00000465167 (SSBP1-013) 141738406-141750332 processed_transcript
ENST00000465582 (SSBP1-014) 141738400-141787922 protein_coding
ENST00000467681 (SSBP1-007) 141738396-141750314 protein_coding
ENST00000468267 (SSBP1-009) 141738409-141739756 retained_intron
ENST00000469123 (SSBP1-012) 141738391-141750456 processed_transcript
ENST00000473783 (SSBP1-011) 141738603-141742229 protein_coding
ENST00000481508 (SSBP1-006) 141738607-141750461 protein_coding
ENST00000484178 (SSBP1-010) 141738600-141750461 protein_coding
ENST00000489378 (SSBP1-003) 141738365-141746526 retained_intron
ENST00000496622 (SSBP1-002) 141738358-141741690 retained_intron
ENST00000498107 (SSBP1-005) 141738358-141750354 protein_coding
ENST00000612337 (SSBP1-201) 141738334-141750488 protein_coding
ENSG00000127362 (TAS2R3)
taste receptor, type 2, member 3 		ENST00000247879 (TAS2R3-001) 141764097-141765197 protein_coding
ENSG00000127364 (TAS2R4)
taste receptor, type 2, member 4 		ENST00000247881 (TAS2R4-001) 141778442-141780819 protein_coding

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003A0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029911-ENSMUSG00000052850 CGP 10090 6:40471352-40492239
GeneTranscriptPositionBiotype
ENSMUSG00000029911 (Ssbp1)
single-stranded DNA binding protein 1 		ENSMUST00000031971 (Ssbp1-002) 40471415-40478587 protein_coding
ENSMUST00000114779 (Ssbp1-001) 40471352-40481823 protein_coding
ENSMUST00000117411 (Ssbp1-004) 40471475-40480992 protein_coding
ENSMUST00000117830 (Ssbp1-005) 40471526-40476511 protein_coding
ENSMUST00000121360 (Ssbp1-003) 40471468-40480995 protein_coding
ENSMUST00000141801 (Ssbp1-006) 40476479-40477450 retained_intron
ENSMUSG00000052850 (Tas2r137)
taste receptor, type 2, member 137 		ENSMUST00000064932 (Tas2r137-201) 40491238-40492239 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003A0_0001ENSG00000106028ENST00000265304ENST00000461433ENST00000463093ENST00000465167ENST00000465582ENST00000467681ENST00000468267ENST00000469123ENST00000473783ENST00000481508ENST00000484178ENST00000489378ENST00000496622ENST00000498107ENST00000612337ENSG00000127362ENST00000247879ENSG00000127364ENST00000247881CIL_0003A0_0002ENSMUSG00000029911ENSMUST00000031971ENSMUST00000114779ENSMUST00000117411ENSMUST00000117830ENSMUST00000121360ENSMUST00000141801ENSMUSG00000052850ENSMUST00000064932
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003A0_0001ENSG00000106028ENST00000265304ENST00000463093ENST00000465167ENST00000465582ENST00000469123ENST00000496622ENST00000498107ENST00000612337ENSG00000127362ENST00000247879ENSG00000127364ENST00000247881CIL_0003A0_0002ENSMUSG00000029911ENSMUST00000031971ENSMUST00000114779ENSMUST00000117411ENSMUST00000121360ENSMUSG00000052850ENSMUST00000064932
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106028 ENST00000265304 41.966±0.00 62.331±0.00 N/A 20.279±4.83 39.064±16.09 34.599±13.18 25.247±11.51 29.930±14.02 22.867±12.73 15.526±3.21 12.802±7.23 59.328±25.65 52.173±13.39 54.919±22.62
ENST00000461433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463093 16.308±0.00 N/A N/A 13.920±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465167 N/A N/A 16.013±0.00 N/A N/A 18.740±0.00 N/A N/A 14.516±0.00 N/A N/A N/A N/A N/A
ENST00000465582 N/A N/A N/A 13.060±0.00 7.786±0.00 N/A 6.428±0.00 5.669±0.00 11.896±0.00 N/A 4.873±0.00 N/A N/A N/A
ENST00000467681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469123 N/A N/A 14.721±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496622 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.437±0.00 N/A N/A N/A N/A
ENST00000498107 N/A 28.574±0.00 N/A 11.258±7.13 N/A 17.354±0.00 12.979±0.00 27.039±0.00 N/A 10.893±0.00 6.379±4.00 25.772±1.78 14.138±2.33 18.280±5.50
ENST00000612337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.942±0.00 N/A N/A
ENSG00000127362 ENST00000247879 N/A 0.074±0.00 0.601±0.00 0.168±0.08 0.548±0.00 0.049±0.00 0.054±0.04 0.740±0.00 0.705±0.00 1.630±0.00 N/A 0.174±0.16 N/A 0.011±0.00
ENSG00000127364 ENST00000247881 0.014±0.00 0.357±0.00 0.439±0.00 0.337±0.01 0.250±0.06 0.295±0.22 0.191±0.14 0.448±0.18 0.298±0.28 0.347±0.33 0.034±0.00 0.521±0.44 0.099±0.09 0.292±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029911 ENSMUST00000031971 1.570±0.45 N/A N/A 4.297±0.00 2.290±1.17 N/A 2.111±0.83 1.708±0.48 7.148±4.70 1.405±0.31 N/A 4.665±0.24 N/A 0.900±0.07
ENSMUST00000114779 N/A N/A N/A 2.925±1.37 0.957±0.40 N/A 1.106±0.39 1.065±0.31 1.185±0.25 0.994±0.03 1.746±0.34 4.194±0.31 N/A 0.616±0.16
ENSMUST00000117411 4.030±0.77 15.922±5.12 6.539±0.32 7.368±0.04 3.373±1.41 3.398±1.39 4.748±0.78 4.078±0.92 7.908±4.86 3.255±0.55 12.664±1.07 11.056±7.07 15.283±11.23 4.053±5.32
ENSMUST00000117830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000121360 4.223±1.09 7.655±2.53 13.783±4.03 7.270±3.16 8.998±5.44 7.580±2.58 1.230±0.14 3.974±1.84 6.914±3.95 5.598±1.04 2.995±0.86 13.270±6.17 6.713±0.77 2.322±1.07
ENSMUST00000141801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052850 ENSMUST00000064932 0.035±0.00 N/A 0.008±0.00 0.062±0.04 N/A N/A 0.042±0.01 0.036±0.00 0.058±0.06 N/A N/A 0.207±0.00 0.006±0.00 0.075±0.02

Loading