C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-stranded DNA binding protein 1, mitochondrial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498107 SSBP1-005 ENSG00000106028 9606 + 7:141738358-141750354 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000498107
Transcript ID Adrenal Brain Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000498107 28.574±0.00 11.258±7.13 17.354±0.00 12.979±0.00 27.039±0.00 10.893±0.00 6.379±4.00 25.772±1.78 14.138±2.33 18.280±5.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A1 CIL_0003A1_0001 CGP 7:141708353-141787922
CIL_0003A0 CIL_0003A0_0001 CGP 7:141738321-141787922

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0006260 IEA DNA replication
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding
GO:0051096 IDA positive regulation of helicase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117411 Ssbp1-004 protein_coding Mus_musculus 0 616
ENSMUST00000121360 Ssbp1-003 protein_coding Mus_musculus 0 616
ENSMUST00000114779 Ssbp1-001 protein_coding Mus_musculus 0 616
ENSMUST00000031971 Ssbp1-002 protein_coding Mus_musculus 0 562
ENSMUST00000117830 Ssbp1-005 protein_coding Mus_musculus 0 357

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