C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106290 TAF6 9606 - 7:100107070-100119841 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344095 TAF6-001 100107079-100119346 protein_coding
  ENST00000417349 TAF6-013 100113882-100119348 protein_coding
  ENST00000421980 TAF6-003 100107070-100119359 nonsense_mediated_decay
  ENST00000431404 TAF6-018 100114169-100119304 protein_coding
  ENST00000437822 TAF6-002 100107168-100119841 protein_coding
  ENST00000440225 TAF6-010 100111965-100119317 protein_coding
  ENST00000449571 TAF6-008 100113401-100119567 protein_coding
  ENST00000451699 TAF6-009 100113670-100119372 protein_coding
  ENST00000452041 TAF6-007 100107078-100119364 protein_coding
  ENST00000452438 TAF6-014 100112847-100119364 protein_coding
  ENST00000453269 TAF6-004 100107070-100119398 protein_coding
  ENST00000460673 TAF6-012 100114182-100119356 protein_coding
  ENST00000472509 TAF6-016 100107078-100114558 protein_coding
  ENST00000487115 TAF6-006 100110077-100111324 retained_intron
  ENST00000487288 TAF6-015 100111799-100118976 retained_intron
  ENST00000493322 TAF6-017 100111954-100119349 protein_coding
  ENST00000497233 TAF6-011 100114229-100119366 processed_transcript
  ENST00000520135 TAF6-020 100113642-100119349 protein_coding
  ENST00000523306 TAF6-019 100113349-100119339 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344095ENST00000437822ENST00000440225ENST00000452041ENST00000453269
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344095 N/A N/A N/A 11.259±8.36 N/A 5.228±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000437822 N/A N/A N/A 2.909±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440225 N/A N/A 2.568±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452041 N/A 15.785±0.00 N/A N/A 34.286±0.00 4.145±3.33 21.854±0.00 3.635±0.00 15.738±0.00 19.141±0.00 22.567±1.09 11.947±2.34 47.709±0.00
ENST00000453269 10.419±0.00 N/A N/A N/A N/A N/A N/A 2.144±0.14 N/A N/A 38.464±0.00 15.718±4.20 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0003DY CIL_0003DY_0001 CGP 7:100092728-100110345
CIL_0005LK CIL_0005LK_0001 CGP 7:100101549-100119841
CIL_0005LJ CIL_0005LJ_0001 CGP 7:100107070-100125511

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA transcription factor TFIID complex
GO:0005737 IDA cytoplasm
GO:0006352 IEA:IDA DNA-templated transcription, initiation
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006366 NAS transcription from RNA polymerase II promoter
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0008285 IDA negative regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0033276 IDA transcription factor TFTC complex
GO:0045786 IDA negative regulation of cell cycle
GO:0046982 IEA protein heterodimerization activity
GO:0051090 IEA regulation of sequence-specific DNA binding transcription factor activity
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029135 taf6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSMUSG00000036980 Taf6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Mus_musculus

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