C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452041 TAF6-007 ENSG00000106290 9606 - 7:100107078-100119364 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000452041
Transcript ID Adrenal Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000452041 15.785±0.00 34.286±0.00 4.145±3.33 21.854±0.00 3.635±0.00 15.738±0.00 19.141±0.00 22.567±1.09 11.947±2.34 47.709±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0003DY CIL_0003DY_0001 CGP 7:100092728-100110345
CIL_0005LK CIL_0005LK_0001 CGP 7:100101549-100119841
CIL_0005LJ CIL_0005LJ_0001 CGP 7:100107070-100125511

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA transcription factor TFIID complex
GO:0005737 IDA cytoplasm
GO:0006352 IEA:IDA DNA-templated transcription, initiation
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006366 NAS transcription from RNA polymerase II promoter
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0008285 IDA negative regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0033276 IDA transcription factor TFTC complex
GO:0045786 IDA negative regulation of cell cycle
GO:0046982 IEA protein heterodimerization activity
GO:0051090 IEA regulation of sequence-specific DNA binding transcription factor activity
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110936 Taf6-001 protein_coding Mus_musculus 0 2370
ENSMUST00000048698 Taf6-002 protein_coding Mus_musculus 0 2368
ENSMUST00000110937 Taf6-005 protein_coding Mus_musculus 0 2008
ENSMUST00000153117 Taf6-004 nonsense_mediated_decay Mus_musculus 0 1849
ENSMUST00000123415 Taf6-003 protein_coding Mus_musculus 0.00000007 64

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