C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036980 Taf6 10090 - 5:138178617-138187451 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048698 Taf6-002 138178617-138187226 protein_coding
  ENSMUST00000110936 Taf6-001 138178617-138187451 protein_coding
  ENSMUST00000110937 Taf6-005 138178620-138187205 protein_coding
  ENSMUST00000123415 Taf6-003 138182675-138187226 protein_coding
  ENSMUST00000130473 Taf6-006 138180148-138181468 retained_intron
  ENSMUST00000139276 Taf6-007 138183917-138187215 protein_coding
  ENSMUST00000153117 Taf6-004 138178628-138187221 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048698ENSMUST00000110936
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048698 23.484±3.29 17.827±7.59 21.255±3.08 32.878±13.56 21.019±5.34 17.119±2.33 21.777±1.91 18.903±2.50 18.650±9.93 19.870±4.62 17.225±1.64 33.455±10.41 27.271±7.78 69.120±3.41
ENSMUST00000110936 N/A 9.371±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0003DY CIL_0003DY_0002 CGP 5:138164583-138178708
CIL_0005LK CIL_0005LK_0002 CGP 5:138172002-138187451
CIL_0005LJ CIL_0005LJ_0002 CGP 5:138178617-138193918

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0005737 IEA cytoplasm
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0008285 IEA negative regulation of cell proliferation
GO:0033276 IEA transcription factor TFTC complex
GO:0045786 IEA negative regulation of cell cycle
GO:0046982 IEA protein heterodimerization activity
GO:0051090 IEA regulation of sequence-specific DNA binding transcription factor activity
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029135 taf6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSG00000106290 TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa protein_coding Homo_sapiens

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