C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106331 PAX4 9606 - 7:127610292-127615928 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338516 PAX4-201 127610811-127615928 protein_coding
  ENST00000341640 PAX4-001 127610292-127615726 protein_coding
  ENST00000378740 PAX4-004 127610811-127615928 protein_coding
  ENST00000463946 PAX4-002 127610938-127615670 protein_coding
  ENST00000477423 PAX4-005 127611751-127615209 retained_intron
  ENST00000483494 PAX4-003 127610937-127615670 nonsense_mediated_decay
  ENST00000611453 PAX4-202 127611816-127615670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverOvaryPlacentaTestisENST00000338516ENST00000463946ENST00000483494
Transcript ID Liver Ovary Placenta Testis
ENST00000338516 0.147±0.00 N/A N/A 0.160±0.00
ENST00000463946 N/A 0.034±0.00 0.088±0.05 0.023±0.00
ENST00000483494 N/A N/A N/A 0.083±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0001 VISTA 7:127234332-127837492
CIL_0001OH CIL_0001OH_0001 CGP 7:127591409-127615928
CIL_0001OG CIL_0001OG_0001 CGP 7:127610292-128092609

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001206 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0007623 IEA circadian rhythm
GO:0009887 TAS organ morphogenesis
GO:0030154 IEA cell differentiation
GO:0031018 TAS endocrine pancreas development
GO:0042493 IEA response to drug
GO:0043066 IEA negative regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045595 IEA regulation of cell differentiation
GO:0045597 IEA positive regulation of cell differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0051591 IEA response to cAMP
GO:0060041 IEA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021336 pax4 paired box 4 protein_coding Danio_rerio
ENSMUSG00000029706 Pax4 paired box 4 protein_coding Mus_musculus

Loading