C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341640 PAX4-001 ENSG00000106331 9606 - 7:127610292-127615726 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0001 VISTA 7:127234332-127837492
CIL_0001OH CIL_0001OH_0001 CGP 7:127591409-127615928
CIL_0001OG CIL_0001OG_0001 CGP 7:127610292-128092609

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001206 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 TAS:IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007623 IEA circadian rhythm
GO:0009887 TAS organ morphogenesis
GO:0030154 IEA cell differentiation
GO:0031018 TAS endocrine pancreas development
GO:0042493 IEA response to drug
GO:0043066 IEA negative regulation of apoptotic process
GO:0045595 IEA regulation of cell differentiation
GO:0045597 IEA positive regulation of cell differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0051591 IEA response to cAMP
GO:0060041 IEA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031718 Pax4-001 protein_coding Mus_musculus 0 909
ENSMUST00000171089 Pax4-003 protein_coding Mus_musculus 0 773
ENSMUST00000164519 Pax4-002 protein_coding Mus_musculus 0 773
ENSMUST00000174423 Pax4-005 retained_intron Mus_musculus 0 675
ENSMUST00000174036 Pax4-004 retained_intron Mus_musculus 0 453
ENSMUST00000174194 Pax4-006 protein_coding Mus_musculus 0 453

Loading